| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081497
Identifier: 99081497
GI number: 99081497
Start: 1756975
End: 1757919
Strand: Reverse
Name: 99081497
Synonym: TM1040_1656
Alternate gene names: NA
Gene position: 1757919-1756975 (Counterclockwise)
Preceding gene: 99081498
Following gene: 99081496
Centisome position: 54.92
GC content: 56.51
Gene sequence:
>945_bases ATGAGTTTTAGAATGATCGAGCCAGAGACGATTGACGACGCCGCATTTGTGTCCTCGACCGTTCCCGAAACTGACGCGCC CGTCTGGGATGCATCAACTGACTATCCGTTCTCTGATCCGGACAACCCAGAAGAGGTGATTGTCGAAGTAGGGCAGCATG CCATTTACCGCGCTGTCGCTCCCTCGGGGCCCAGCCATGGTGGCGCAGTCGATCCTGCCACCGACACGGGGAACACCAAA TGGGTGAAAATCCGCTCTACCAACCGTTGGCGGGTCTTCGATGAGTATATCGGCGATCCGAGCGTGCAGGCAAATAGCGC GCAATGGGTGATAACCGCGCCCAAAGTCATCGACAGTGTGTCTTTGTTCGGGCTCTACGCCCTGTCGGTGACGGTCCTTG TTCGCGACAGTGGTGGGGCCGAGGTCTACAATCAGACATACTCGCTGCAGGATGAGAGTGGTGTGGTTGATCTCTACACC TACCTCACCAGCCCGATTATCCTCAGTGACCGCTTGGTCATCACAGATATTCCGCCCTACGCGGGTGCAAAGGTGACTGT CACTGCGGAGGCATCTGGAGAGGACGTAGAGGTCGGGCAGATCGTGATCGGCCGAAAAGAAGAGATCGGCGTCACGATTG ATGAGATCCCGCTATCGATCCAGGACTTCTCCCGCAAAGAGCGCGACCCTGATTTTGGTCGGGTGTCGCTGTTGGAGAAA GACTTTGCAGACGAAATGCCCGTCGCATTTGTCTTTCCGACCTCGCGCGCTTCCTACCTGAAAAGCCGTCTGGCAAGCCG CCGCGCCAAACTGACGGTCTACAGCAGCGATGGGCCGTACAAGGCCAATGAGTTTTCCGTCTACGGATTTTACCAGTCCT TTCAGGTCGTTCCCCGCATCGGGAGCGAGTCTGAGGGCATTCTCGAACTGGAGAGTATCACATGA
Upstream 100 bases:
>100_bases TGCTGGAATCCCATGCGCGCGCAACGACTTACAACACGGGCAAGGCGATGCGGACGCAGACCAAATGGGACAGAGACGGT GTTCCGAAGGAGCGAACCGA
Downstream 100 bases:
>100_bases GCGATCCGACGATCACACCGCCGCCAGATGCACCATCTCGTCAGCAGCCGTCTACCTTCTCCGCGCGGGGAGATGCGTTC TTTGCCTGGTTGGTCACATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSFRMIEPETIDDAAFVSSTVPETDAPVWDASTDYPFSDPDNPEEVIVEVGQHAIYRAVAPSGPSHGGAVDPATDTGNTK WVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPKVIDSVSLFGLYALSVTVLVRDSGGAEVYNQTYSLQDESGVVDLYT YLTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGSESEGILELESIT
Sequences:
>Translated_314_residues MSFRMIEPETIDDAAFVSSTVPETDAPVWDASTDYPFSDPDNPEEVIVEVGQHAIYRAVAPSGPSHGGAVDPATDTGNTK WVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPKVIDSVSLFGLYALSVTVLVRDSGGAEVYNQTYSLQDESGVVDLYT YLTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGSESEGILELESIT >Mature_313_residues SFRMIEPETIDDAAFVSSTVPETDAPVWDASTDYPFSDPDNPEEVIVEVGQHAIYRAVAPSGPSHGGAVDPATDTGNTKW VKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPKVIDSVSLFGLYALSVTVLVRDSGGAEVYNQTYSLQDESGVVDLYTY LTSPIILSDRLVITDIPPYAGAKVTVTAEASGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDPDFGRVSLLEKD FADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRIGSESEGILELESIT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34450; Mature: 34318
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFRMIEPETIDDAAFVSSTVPETDAPVWDASTDYPFSDPDNPEEVIVEVGQHAIYRAVA CCCEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHEEEEEC PSGPSHGGAVDPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPKVIDSV CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECHHHHHHH SLFGLYALSVTVLVRDSGGAEVYNQTYSLQDESGVVDLYTYLTSPIILSDRLVITDIPPY HHHHEEEEEEEEEEECCCCCEEECCEECCCCCCCEEEEEHHHCCCEEEECCEEEEECCCC AGAKVTVTAEASGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK CCCEEEEEECCCCCCEEEEEEEECCCHHHCEEHHHCCCCHHHHHHHCCCCCCCEEHHHHH DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRI HHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEHHHEEEEECC GSESEGILELESIT CCCCCCEEEEECCC >Mature Secondary Structure SFRMIEPETIDDAAFVSSTVPETDAPVWDASTDYPFSDPDNPEEVIVEVGQHAIYRAVA CCEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHEEEEEC PSGPSHGGAVDPATDTGNTKWVKIRSTNRWRVFDEYIGDPSVQANSAQWVITAPKVIDSV CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEHHHHCCCCCCCCCCCEEEEECHHHHHHH SLFGLYALSVTVLVRDSGGAEVYNQTYSLQDESGVVDLYTYLTSPIILSDRLVITDIPPY HHHHEEEEEEEEEEECCCCCEEECCEECCCCCCCEEEEEHHHCCCEEEECCEEEEECCCC AGAKVTVTAEASGEDVEVGQIVIGRKEEIGVTIDEIPLSIQDFSRKERDPDFGRVSLLEK CCCEEEEEECCCCCCEEEEEEEECCCHHHCEEHHHCCCCHHHHHHHCCCCCCCEEHHHHH DFADEMPVAFVFPTSRASYLKSRLASRRAKLTVYSSDGPYKANEFSVYGFYQSFQVVPRI HHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEHHHEEEEECC GSESEGILELESIT CCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA