Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081470

Identifier: 99081470

GI number: 99081470

Start: 1736144

End: 1738018

Strand: Reverse

Name: 99081470

Synonym: TM1040_1629

Alternate gene names: NA

Gene position: 1738018-1736144 (Counterclockwise)

Preceding gene: 99081471

Following gene: 99081467

Centisome position: 54.3

GC content: 60.11

Gene sequence:

>1875_bases
ATGACGCAGGATAGCGATGCGCTGCAAGCGGATTTCGAAAATGAAGAAGTGATCGCTCCGATGGATGATGGTCCGCCACC
TCAGAAACCGAGAGGACCAATTGGAAAATCGGGCGCTGGAGCGGGTAGGGCGGGGCGTGGTGGTAAGCAGGGCAGCGGCA
AGCCGTCATCGATCTTGCCAGAAGGATTCCCCGTGCAGCCGCTCGGTATGTCTGCGGGAAAGTACTATTTCCTCAATGCC
CGCGGTGAGAGAATCGATTTGACCGCAGGCGCTTTGAGTCAGCGTGCCAATCTGGTGTCATTGCTGGCTGGCAGCACAAC
GCCGAAACGGCACCTGAAAGATATCGCTCCGCCGGACGCGCGCAAGGATACAGATTTCAACCCTGCAAATGCGGCTGACA
AGCTCATGCAGGCCTGTGCCGAAATGCCGCTTTATGATCCATCGAAACCGGTCCGCCATTTCGGGACTTGGCGTGGCGGA
TCTGTGCATCCGGTTGTCCACCTCGGCGAAACGGTCGAGACCTCATCGGAAGAAGAGGTTGTCGGGCGCATGATCGGTAG
TGACCTCTATCCCGCAGTGCCGACGCTGGGCCTCCCGGATGGGGTCGCGGCCACTGCAGAAGAGATGAACATCATCCGGA
TGGCGCTTCGCGATGGGTGGAACTGGGTGTCTCCAGATGCCGTGGATCTGGTGATAGGTTGGATTGGTCAGGCGGCACTA
GGCCAGTACCCCCGATGGCGCAGCCATATGTGGATCCGTGGGCGTTCTGGTGCCGGTAAAACAACGTTGCTCGAGGTGAT
ATCTTCGCTGCTAGGTGGGATGTCGACAGGTGTGAAGAGCAGCGGGTCATCGGCCTCGATCAGGCAGACAACCAACCGGA
TGGCGATTGCGCGGATCTTTGATGAGGCCGAGGGCACCGGGACCGGCGACATCGAAGATGTAATCGCTCTGTTTCGTCTG
ATGTCCGATGCGCATGGCGCGCGGGTGGAGCGAGGGACCTCTGACCATACTGGCATTCGCTTTGAGATCTACGGAGCGGG
CCTTCTGGGCTCGATCATTCCAGGATCGATGACGCCACAGGACAGATCCCGGTTTGTCGTTGTTCCTCTGAAGGTTAGAG
AGAAGTCTTCAGATCCGGCGCATGACGCGGTCGAGCTCGACAAGTTGGAACGAAGGGCAAAGGAGCTTGGCCCCCGGGTT
TGGAGGCGCATGCTAAGCCTAGCGTCCCAGCGTTGGGATAGCACGTTTCGGGTTTACAACAGCCTTGTGCAGAGCCTCGG
CGCCCAGGCACGTGCAGGAGACACGGTAGGCGCATTGCTTGCCGGCTGGGACCTGATGCTGTTCGAGAGGCCGCTGGTGG
ACCCTGAGACAAATCAGGCCGATCCTAAGCGCATGGAGCGCGCTCTGGCCATGGCACTCCCGCTTGTCGAGGAAACCCGC
GAGGCTGAGGAGGAGGGCGAAGGTGAGCGCCTGCTGACGTGGATCTTCGGAGCGATGATCCACAAGGATCACGGTGGCAT
GATTTCGGTTAGCGAGTTGATCCAGACCATCCAGGAGTTCCAGGACGTGAAGTCGGGCGAATACCAGAACAAGCTCCTCG
CTCGATTGGGGCTGAGGGTCATGCCGGGCGAGCGCGGGCAGCGCGACCTCTTCGTGGCAAACGGTGAGAACCCGCAGCTG
AACAAGGCGCTCGCGAACACGCGGTGGCGTGGCGGTGGGCACCGCGCAGCGCTGGATACTATGCCTGAGGTGGCTCCTGC
GCCAAAGCCAGTCAGAGTTGATGGTAGGCCCAAGAGGGGCCTCGTTGTGCCCGCGCGTTTCCTCCCCGGCTATATCAAAG
AAACCGCCTCGAACGAGGGGGAGGATGGCATCTGA

Upstream 100 bases:

>100_bases
AGGAATGGTGCCTGTCGCTGTTTCGGGCAGCGACGCTCGCGCACGAGTTTAGTCAATCAAAAGAGTCCTAACGGGCCAAT
TGCAGGAAAGGAGGGCAGGC

Downstream 100 bases:

>100_bases
TAGGTTGGATGGGCGTTACGTTTGAGCTCGAGCGTAACGCAAACGTAACGCCTTAAGTAACGGAGGCAATGCATTGAAAA
TAATTCAGAATATATGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 624; Mature: 623

Protein sequence:

>624_residues
MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGMSAGKYYFLNA
RGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGG
SVHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL
GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRL
MSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRV
WRRMLSLASQRWDSTFRVYNSLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR
EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQL
NKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI

Sequences:

>Translated_624_residues
MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGMSAGKYYFLNA
RGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGG
SVHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL
GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRL
MSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRV
WRRMLSLASQRWDSTFRVYNSLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR
EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQL
NKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI
>Mature_623_residues
TQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILPEGFPVQPLGMSAGKYYFLNAR
GERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDARKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGGS
VHPVVHLGETVETSSEEEVVGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAALG
QYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIFDEAEGTGTGDIEDVIALFRLM
SDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQDRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVW
RRMLSLASQRWDSTFRVYNSLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETRE
AEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRVMPGERGQRDLFVANGENPQLN
KALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRGLVVPARFLPGYIKETASNEGEDGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67607; Mature: 67475

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILP
CCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EGFPVQPLGMSAGKYYFLNARGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDA
CCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
RKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGGSVHPVVHLGETVETSSEEEV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCHHCCCCHHHH
VGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIF
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
DEAEGTGTGDIEDVIALFRLMSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQ
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCC
DRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVWRRMLSLASQRWDSTFRVYN
CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR
HHHHHHCCCCCCCCHHHHHHHCCHHEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRV
HHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEE
MPGERGQRDLFVANGENPQLNKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRG
CCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCC
LVVPARFLPGYIKETASNEGEDGI
EEECHHHCCHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TQDSDALQADFENEEVIAPMDDGPPPQKPRGPIGKSGAGAGRAGRGGKQGSGKPSSILP
CCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EGFPVQPLGMSAGKYYFLNARGERIDLTAGALSQRANLVSLLAGSTTPKRHLKDIAPPDA
CCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
RKDTDFNPANAADKLMQACAEMPLYDPSKPVRHFGTWRGGSVHPVVHLGETVETSSEEEV
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCHHCCCCHHHH
VGRMIGSDLYPAVPTLGLPDGVAATAEEMNIIRMALRDGWNWVSPDAVDLVIGWIGQAAL
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
GQYPRWRSHMWIRGRSGAGKTTLLEVISSLLGGMSTGVKSSGSSASIRQTTNRMAIARIF
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
DEAEGTGTGDIEDVIALFRLMSDAHGARVERGTSDHTGIRFEIYGAGLLGSIIPGSMTPQ
HHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCC
DRSRFVVVPLKVREKSSDPAHDAVELDKLERRAKELGPRVWRRMLSLASQRWDSTFRVYN
CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
SLVQSLGAQARAGDTVGALLAGWDLMLFERPLVDPETNQADPKRMERALAMALPLVEETR
HHHHHHCCCCCCCCHHHHHHHCCHHEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EAEEEGEGERLLTWIFGAMIHKDHGGMISVSELIQTIQEFQDVKSGEYQNKLLARLGLRV
HHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEE
MPGERGQRDLFVANGENPQLNKALANTRWRGGGHRAALDTMPEVAPAPKPVRVDGRPKRG
CCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCC
LVVPARFLPGYIKETASNEGEDGI
EEECHHHCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA