| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081445
Identifier: 99081445
GI number: 99081445
Start: 1714865
End: 1715674
Strand: Reverse
Name: 99081445
Synonym: TM1040_1604
Alternate gene names: NA
Gene position: 1715674-1714865 (Counterclockwise)
Preceding gene: 99081446
Following gene: 99081444
Centisome position: 53.6
GC content: 61.23
Gene sequence:
>810_bases ATGCAGAAGAACTTCGACCGAAGCCTTGATTGGGTTCTGGCCCATGAAGGCGGTTATGTGAACCACCCCAAGGATCCGGG GGGAGCAACGAATATGGGCGTCACCCAGCGCACATATGATGCCGATCTGCGGCGTCGTCAGCTGTCATCTCGCAGCGTGA AACTGATCACCATGGAAGAAGTGAAGGCGATCTATCGCAGCCAATACTGGGACAAGGTGGGTGGCGATGAGCTTCCCGGG GGCTTGGACTACTGCGTCTTTGACTTCGCGGTAAACAGCGGTGTTTCGCGCGCTGTGAAGTTCATGCAGCGCCAGCTGGG CGTCAAGGCTGATGGGATTGTCGGGGTGAACACCATGGAAGCCGTAGACCGCGCGGACGTCGAAGGGTTGATCCAGTCTA TCTGTCAGGCTCGGTTCTCCTGGCTGAAGAAGCTGCGCCACTGGGGCACGTTTGGCCGCGGCTGGACACGCCGGGTGATG GGGGAAAGCCTCGGCGTTCAGGCGCGCGACACCGGCGTGATCGATCGCGCTGTCTACCTCCATCGTGAACTTGCCGTCAT TCACGCGCCGTCCTATCGCGAGGATGGTTCGGGGGCCCGCGCCGAAGACGGTGAACGGAGCCTGTCTGCCACGGTCAAGG AGTTGATCACGTCTGGTAAGGGGTGGACCAATGGCGGCGCTTTGGGCGGCGGCGCAATCGCCCTCACACAGCTTCAAGGC CCTGTTGCCTACGCCTTGGCCGCTGTGCTTCTGATTGCTGCTGTGACCGCCGCTCTGTACTTCCTGCGCTCGCAGGAGGC TGCGGCATGA
Upstream 100 bases:
>100_bases GAATACCGTGTGAACACTCTCTGGCGCATCCATCCGACGCAGGGCAGGGCACGCGAGATCAGGCGCACCAGCAACACATT CACGATCAGCGGAGGCTAGA
Downstream 100 bases:
>100_bases CCGGCTTGATCGCATTCCTCATGCGCATGGGGTTCGGCGGTATGGTGGACAAAGCCATCAGCCATTTGGAGCGCCGCGCT GAGCTTCAAAACGACCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYWDKVGGDELPG GLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVM GESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG PVAYALAAVLLIAAVTAALYFLRSQEAAA
Sequences:
>Translated_269_residues MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYWDKVGGDELPG GLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVM GESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG PVAYALAAVLLIAAVTAALYFLRSQEAAA >Mature_269_residues MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEEVKAIYRSQYWDKVGGDELPG GLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTMEAVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVM GESLGVQARDTGVIDRAVYLHRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG PVAYALAAVLLIAAVTAALYFLRSQEAAA
Specific function: Unknown
COG id: COG3926
COG function: function code R; Putative secretion activating protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29294; Mature: 29294
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEE CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH VKAIYRSQYWDKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTME HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEECCHHHH AVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH HRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG HHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHCC PVAYALAAVLLIAAVTAALYFLRSQEAAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQKNFDRSLDWVLAHEGGYVNHPKDPGGATNMGVTQRTYDADLRRRQLSSRSVKLITMEE CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH VKAIYRSQYWDKVGGDELPGGLDYCVFDFAVNSGVSRAVKFMQRQLGVKADGIVGVNTME HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEECCHHHH AVDRADVEGLIQSICQARFSWLKKLRHWGTFGRGWTRRVMGESLGVQARDTGVIDRAVYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH HRELAVIHAPSYREDGSGARAEDGERSLSATVKELITSGKGWTNGGALGGGAIALTQLQG HHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHCC PVAYALAAVLLIAAVTAALYFLRSQEAAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA