| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is maeB [H]
Identifier: 99081414
GI number: 99081414
Start: 1680851
End: 1683130
Strand: Direct
Name: maeB [H]
Synonym: TM1040_1573
Alternate gene names: 99081414
Gene position: 1680851-1683130 (Clockwise)
Preceding gene: 99081408
Following gene: 99081415
Centisome position: 52.51
GC content: 60.96
Gene sequence:
>2280_bases ATGCCCGACAAGACCTCGGAATCCCTGCGCGACGCGGCTCTGCGCTACCACGAGTTCCCGCGTCCCGGTAAACTGGAAAT TCGCGCCACAAAACCGCTGGCCACTGGCAACGACCTTGCACGGGCCTACTCACCCGGCGTGGCTGAAGCCTGTCTTGAGA TCAAGGACGACGAGGCCAATGCCGCGCGCTACACGGCGCGGGGCAATCTGGTTGCGGTGGTCTCCAACGGCTCTGCGGTT CTGGGACTTGGCAACATCGGTGCGCTGGCCTCCAAACCGGTGATGGAAGGCAAGGCGGTTCTATTCAAGAACTTCGCCAA TATCGACTGCTTTGACATTGAATTGAACGAGAGCGATCCTGAGAAACTGGCCGACATCGTCTGCGCGCTGGAGCCGACCT TTGGCGCGGTAAACCTTGAAGACATCAAGGCACCTGATTGTTTTATCGTCGAAAAACTCTGTCGCGAGCGGATGAACATC CCCGTGTTTCACGATGACCAGCATGGCACCGCGATCGTTGTCGGCGCCGCGGCCAAGAACGCGCTCCATGTAGCGGGCAA GAAGTTCGAGGACATCAAGATCGTCTCGACCGGCGGCGGGGCAGCGGGCATTGCCTGCCTCAACATGCTGCTGAAACTTG GGGTCAAGCGAGAGAACGTCTGGCTCTGCGATATTCACGGCTTGGTCTATGAAGGCCGCGAGGAGGACATGAACCCGCAC AAGGCGGCCTTTGCTCAGGCTTCTGAGAAACGGACGCTGGATGAGGTGATCGACGGCGCGGATCTGTTCCTTGGCCTTTC CGGTCCCAATGTGCTCAAGCCCGAGATGGTCACGAAGATGGCGAAACGCCCGATCATCTTTGCGCTGGCGAACCCGACCC CGGAGATCATGCCCGATGAGGCGCGCAAGGTGGCGCCAGACGCTATCATCGCCACGGGTCGCAGCGATTTTCCCAATCAG GTCAACAACGTACTGTGCTTTCCGTTTATCTTCCGTGGCGCGCTGGACGTTGGCGCCACTGAGATCAACGACGAGATGCA GATTGCCTGTGTCGAGGGGATCGCAGAGCTTGCGCGGACCACAACCTCAGCCGAGGCGGCTGCGGCCTACAAGGGGGAGC AGCTCACCTTTGGCGCGGATTACCTGATCCCAAAGCCTTTTGACCCGCGTCTGGTGGCGGTGGTTTCCTCTGCCGTTGCG CGCGCGGCCATGTCCAGCGGCGTGGCCAAGCGGCCGATCGACGATCTGGGGGCTTACCGCGCCAAGCTGAACCAAAGCGT GTTCAAATCCGCGCTCCTGATGAAACCTGTGTTCGAGGCCGCTCGCGCGGCAGCCCGCCGGATCGTCTTTGCTGAAGGCG AAGACGAGCGCGTCTTGCGCACCGCACAGGAGATGCTGCGCGAGACCACAGAGACTCCGATCCTGATTGGTCGACCGGAG GTGATCGAGCACCGCTGCCAGCGTCTGGGACTGTCGATCCGTCCCGGTCAGGACGTTCAAATTGTGAACCCTGAAAACGA TCCGCGCTACCGTGACTATTGGACCAGCTATCATCGGATCATGGAGCGCCGGGGGGTGACGCCGGATCTCGCCAAAGCGA TCCTGCGCACCAACACCACCGCGATTGGCGCCATCATGGTGCATCGCGGAGAGGCGGACAGCCTGATCTGCGGCACGTTC GGAGAGTACCGCTGGCACCTCAACTATGTGCAGCAGATCCTGGGCGGCGGTTCTTATGCGCCACATGGGGCGCTCTCGAT GATGATCCTCGACGATGGGCCGATGTTCATTGCCGACACCCAGGTCCGCATTGAACCGACTCCAGAAGAAATCGCCGAAA CCGTGATCGGTGCAGCGCGCCATGTGCGCCGATTTGGTCTGAAGCCGCAGATTGCGCTCTGTTCGCAGAGCCAGTTCGGC AACATCCAATGCGACACCGGGGAGCGTCTGCGCGCAGCTTTGGCGATCCTCGACGACAAGCGGCGCGATTTTGTCTACGA GGGCGAAATGAACATCGACACCGCGCTCGACCCGGAGCTGCGTGAGCGGATCTTCCCCAATTCGCGGCTAGAAGGTGCTG CCAATGTGCTGGTCTTTGCCCATGCGGATGCGGCGTCTGGTGTGCGCAACATCCTCAAGATGCGCTCTGGCGGGCTTGAG GTCGGGCCGATCCTGATGGGCATGGGCAACCGCGCTCATATTGTTTCCCCGTCGATCACCGCACGCGGATTGTTGAACAT GGCCGCCATCGCGGGCACTCCGGTCGCCCATTACGGCTGA
Upstream 100 bases:
>100_bases ATGCAAAGCCTTGCCGATGATCTGCGCCTTGTGCAAAAGGCGGTTCCCCTCACCCGCAAGATAGTTTAGCACTAAACTAT CACCATCAGGAGCGACCTTC
Downstream 100 bases:
>100_bases CGCCCAGCGCAGCGCAAAATGATCTCTGCGAGGGGCAGCCCTGCCCTTCGCCCTCCACGCGCGGCGCGCCGTGGCCTCGA CCTTGACCTTGACCTAAGGT
Product: malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 759; Mature: 758
Protein sequence:
>759_residues MPDKTSESLRDAALRYHEFPRPGKLEIRATKPLATGNDLARAYSPGVAEACLEIKDDEANAARYTARGNLVAVVSNGSAV LGLGNIGALASKPVMEGKAVLFKNFANIDCFDIELNESDPEKLADIVCALEPTFGAVNLEDIKAPDCFIVEKLCRERMNI PVFHDDQHGTAIVVGAAAKNALHVAGKKFEDIKIVSTGGGAAGIACLNMLLKLGVKRENVWLCDIHGLVYEGREEDMNPH KAAFAQASEKRTLDEVIDGADLFLGLSGPNVLKPEMVTKMAKRPIIFALANPTPEIMPDEARKVAPDAIIATGRSDFPNQ VNNVLCFPFIFRGALDVGATEINDEMQIACVEGIAELARTTTSAEAAAAYKGEQLTFGADYLIPKPFDPRLVAVVSSAVA RAAMSSGVAKRPIDDLGAYRAKLNQSVFKSALLMKPVFEAARAAARRIVFAEGEDERVLRTAQEMLRETTETPILIGRPE VIEHRCQRLGLSIRPGQDVQIVNPENDPRYRDYWTSYHRIMERRGVTPDLAKAILRTNTTAIGAIMVHRGEADSLICGTF GEYRWHLNYVQQILGGGSYAPHGALSMMILDDGPMFIADTQVRIEPTPEEIAETVIGAARHVRRFGLKPQIALCSQSQFG NIQCDTGERLRAALAILDDKRRDFVYEGEMNIDTALDPELRERIFPNSRLEGAANVLVFAHADAASGVRNILKMRSGGLE VGPILMGMGNRAHIVSPSITARGLLNMAAIAGTPVAHYG
Sequences:
>Translated_759_residues MPDKTSESLRDAALRYHEFPRPGKLEIRATKPLATGNDLARAYSPGVAEACLEIKDDEANAARYTARGNLVAVVSNGSAV LGLGNIGALASKPVMEGKAVLFKNFANIDCFDIELNESDPEKLADIVCALEPTFGAVNLEDIKAPDCFIVEKLCRERMNI PVFHDDQHGTAIVVGAAAKNALHVAGKKFEDIKIVSTGGGAAGIACLNMLLKLGVKRENVWLCDIHGLVYEGREEDMNPH KAAFAQASEKRTLDEVIDGADLFLGLSGPNVLKPEMVTKMAKRPIIFALANPTPEIMPDEARKVAPDAIIATGRSDFPNQ VNNVLCFPFIFRGALDVGATEINDEMQIACVEGIAELARTTTSAEAAAAYKGEQLTFGADYLIPKPFDPRLVAVVSSAVA RAAMSSGVAKRPIDDLGAYRAKLNQSVFKSALLMKPVFEAARAAARRIVFAEGEDERVLRTAQEMLRETTETPILIGRPE VIEHRCQRLGLSIRPGQDVQIVNPENDPRYRDYWTSYHRIMERRGVTPDLAKAILRTNTTAIGAIMVHRGEADSLICGTF GEYRWHLNYVQQILGGGSYAPHGALSMMILDDGPMFIADTQVRIEPTPEEIAETVIGAARHVRRFGLKPQIALCSQSQFG NIQCDTGERLRAALAILDDKRRDFVYEGEMNIDTALDPELRERIFPNSRLEGAANVLVFAHADAASGVRNILKMRSGGLE VGPILMGMGNRAHIVSPSITARGLLNMAAIAGTPVAHYG >Mature_758_residues PDKTSESLRDAALRYHEFPRPGKLEIRATKPLATGNDLARAYSPGVAEACLEIKDDEANAARYTARGNLVAVVSNGSAVL GLGNIGALASKPVMEGKAVLFKNFANIDCFDIELNESDPEKLADIVCALEPTFGAVNLEDIKAPDCFIVEKLCRERMNIP VFHDDQHGTAIVVGAAAKNALHVAGKKFEDIKIVSTGGGAAGIACLNMLLKLGVKRENVWLCDIHGLVYEGREEDMNPHK AAFAQASEKRTLDEVIDGADLFLGLSGPNVLKPEMVTKMAKRPIIFALANPTPEIMPDEARKVAPDAIIATGRSDFPNQV NNVLCFPFIFRGALDVGATEINDEMQIACVEGIAELARTTTSAEAAAAYKGEQLTFGADYLIPKPFDPRLVAVVSSAVAR AAMSSGVAKRPIDDLGAYRAKLNQSVFKSALLMKPVFEAARAAARRIVFAEGEDERVLRTAQEMLRETTETPILIGRPEV IEHRCQRLGLSIRPGQDVQIVNPENDPRYRDYWTSYHRIMERRGVTPDLAKAILRTNTTAIGAIMVHRGEADSLICGTFG EYRWHLNYVQQILGGGSYAPHGALSMMILDDGPMFIADTQVRIEPTPEEIAETVIGAARHVRRFGLKPQIALCSQSQFGN IQCDTGERLRAALAILDDKRRDFVYEGEMNIDTALDPELRERIFPNSRLEGAANVLVFAHADAASGVRNILKMRSGGLEV GPILMGMGNRAHIVSPSITARGLLNMAAIAGTPVAHYG
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI62420882, Length=346, Percent_Identity=26.878612716763, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI62420880, Length=346, Percent_Identity=26.878612716763, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI239049447, Length=346, Percent_Identity=26.878612716763, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI4505143, Length=346, Percent_Identity=26.3005780346821, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI4505145, Length=337, Percent_Identity=24.0356083086053, Blast_Score=71, Evalue=4e-12, Organism=Homo sapiens, GI270265879, Length=319, Percent_Identity=24.7648902821317, Blast_Score=70, Evalue=1e-11, Organism=Escherichia coli, GI1788806, Length=749, Percent_Identity=55.1401869158878, Blast_Score=843, Evalue=0.0, Organism=Escherichia coli, GI1788800, Length=322, Percent_Identity=27.0186335403727, Blast_Score=105, Evalue=2e-23, Organism=Escherichia coli, GI1788635, Length=309, Percent_Identity=25.5663430420712, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI87081919, Length=297, Percent_Identity=26.2626262626263, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322823, Length=236, Percent_Identity=30.9322033898305, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21356279, Length=393, Percent_Identity=25.1908396946565, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI281362672, Length=393, Percent_Identity=25.1908396946565, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI281362674, Length=393, Percent_Identity=25.1908396946565, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24646388, Length=347, Percent_Identity=27.9538904899135, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24646386, Length=347, Percent_Identity=27.9538904899135, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI78707242, Length=398, Percent_Identity=25.3768844221106, Blast_Score=73, Evalue=6e-13, Organism=Drosophila melanogaster, GI78707238, Length=398, Percent_Identity=25.3768844221106, Blast_Score=73, Evalue=6e-13, Organism=Drosophila melanogaster, GI78707240, Length=342, Percent_Identity=25.4385964912281, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI78707232, Length=352, Percent_Identity=25.8522727272727, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363505, Length=352, Percent_Identity=25.8522727272727, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI78707236, Length=352, Percent_Identity=25.8522727272727, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363503, Length=352, Percent_Identity=25.8522727272727, Blast_Score=68, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 82413; Mature: 82281
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDKTSESLRDAALRYHEFPRPGKLEIRATKPLATGNDLARAYSPGVAEACLEIKDDEAN CCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHCCCCCCC AARYTARGNLVAVVSNGSAVLGLGNIGALASKPVMEGKAVLFKNFANIDCFDIELNESDP CEEEEECCCEEEEEECCCEEEEECCCCCHHCCCCCCCCCEEEECCCCCEEEEEEECCCCH EKLADIVCALEPTFGAVNLEDIKAPDCFIVEKLCRERMNIPVFHDDQHGTAIVVGAAAKN HHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCCC ALHVAGKKFEDIKIVSTGGGAAGIACLNMLLKLGVKRENVWLCDIHGLVYEGREEDMNPH HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCCCHH KAAFAQASEKRTLDEVIDGADLFLGLSGPNVLKPEMVTKMAKRPIIFALANPTPEIMPDE HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCH ARKVAPDAIIATGRSDFPNQVNNVLCFPFIFRGALDVGATEINDEMQIACVEGIAELART HHHCCCCCEEECCCCCCCHHHHCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH TTSAEAAAAYKGEQLTFGADYLIPKPFDPRLVAVVSSAVARAAMSSGVAKRPIDDLGAYR CCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH AKLNQSVFKSALLMKPVFEAARAAARRIVFAEGEDERVLRTAQEMLRETTETPILIGRPE HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCHH VIEHRCQRLGLSIRPGQDVQIVNPENDPRYRDYWTSYHRIMERRGVTPDLAKAILRTNTT HHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC AIGAIMVHRGEADSLICGTFGEYRWHLNYVQQILGGGSYAPHGALSMMILDDGPMFIADT EEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECC QVRIEPTPEEIAETVIGAARHVRRFGLKPQIALCSQSQFGNIQCDTGERLRAALAILDDK EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHCCC RRDFVYEGEMNIDTALDPELRERIFPNSRLEGAANVLVFAHADAASGVRNILKMRSGGLE CCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCE VGPILMGMGNRAHIVSPSITARGLLNMAAIAGTPVAHYG ECHHEECCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure PDKTSESLRDAALRYHEFPRPGKLEIRATKPLATGNDLARAYSPGVAEACLEIKDDEAN CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHCCCCCCC AARYTARGNLVAVVSNGSAVLGLGNIGALASKPVMEGKAVLFKNFANIDCFDIELNESDP CEEEEECCCEEEEEECCCEEEEECCCCCHHCCCCCCCCCEEEECCCCCEEEEEEECCCCH EKLADIVCALEPTFGAVNLEDIKAPDCFIVEKLCRERMNIPVFHDDQHGTAIVVGAAAKN HHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCCC ALHVAGKKFEDIKIVSTGGGAAGIACLNMLLKLGVKRENVWLCDIHGLVYEGREEDMNPH HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCCCHH KAAFAQASEKRTLDEVIDGADLFLGLSGPNVLKPEMVTKMAKRPIIFALANPTPEIMPDE HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCH ARKVAPDAIIATGRSDFPNQVNNVLCFPFIFRGALDVGATEINDEMQIACVEGIAELART HHHCCCCCEEECCCCCCCHHHHCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH TTSAEAAAAYKGEQLTFGADYLIPKPFDPRLVAVVSSAVARAAMSSGVAKRPIDDLGAYR CCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH AKLNQSVFKSALLMKPVFEAARAAARRIVFAEGEDERVLRTAQEMLRETTETPILIGRPE HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCHH VIEHRCQRLGLSIRPGQDVQIVNPENDPRYRDYWTSYHRIMERRGVTPDLAKAILRTNTT HHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC AIGAIMVHRGEADSLICGTFGEYRWHLNYVQQILGGGSYAPHGALSMMILDDGPMFIADT EEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECC QVRIEPTPEEIAETVIGAARHVRRFGLKPQIALCSQSQFGNIQCDTGERLRAALAILDDK EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHCCC RRDFVYEGEMNIDTALDPELRERIFPNSRLEGAANVLVFAHADAASGVRNILKMRSGGLE CCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCE VGPILMGMGNRAHIVSPSITARGLLNMAAIAGTPVAHYG ECHHEECCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]