Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081393

Identifier: 99081393

GI number: 99081393

Start: 1659441

End: 1659959

Strand: Reverse

Name: 99081393

Synonym: TM1040_1552

Alternate gene names: NA

Gene position: 1659959-1659441 (Counterclockwise)

Preceding gene: 99081394

Following gene: 99081392

Centisome position: 51.86

GC content: 59.73

Gene sequence:

>519_bases
ATGAGCCGCCCCCGTCCCGAACCCGTGCAGGTGATCAAGCAACGCCGTGATGCTGCCTTGGCGGCGCTGGTGGAATCGGT
GCCCTACATTGGCTTTCTCGGCATCACCTTTGAGCGCCGCGGCGATGAGCTGACGTCGACTATGCATTTTCATGAAAATA
TCATCGGCAACCCGATGCTGCCTGCGATCCACGGCGGTGCGACGGCGGCCTTTCTGGAGGTGACCTCCGTTATCACCCTG
CAGTGGTTCCATCTGTGGCCCCAATTTGAAAGTGGAGAGCTGGACGTGGAGACAATGGCCGCAGGCCAGATGCCGCGTCT
GCCCAAGACCATTGATTTTACCGTCGACTATCTGCGCTCGGGCCTGCCGCGCGACTCTTATGCGCGTGCAACGGTCAATC
GCTCTGGACGGCGGTATGCCTCTGTGCATGTGGCCGCATGGCAGGACCATAAGGAAAAGCTCTTTGCACAAGCGACGGGT
CATTTCCTGATGCCGCAGGAACGCCCCTCAGGCAACTGA

Upstream 100 bases:

>100_bases
TGACGCGCAACGTGGCCTTCGTGCGCGCAGTTGCAACCGATGACGAAACAGAAGTGCCCGTTGCAACCGCCTCCGGGGCC
TTCACGCTGGAGCCAAAACG

Downstream 100 bases:

>100_bases
TTTCAAAAGGAATACCCTATGTCGGAGGCGTCAGGCCCCATCACCCATTCCCGGGTGCTCAAGATCGCGTTGCCGATTGT
TTTGTCCAATGCCACCGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: Thioesterase Family Protein; Phenylacetic Acid Degradation-Related Protein; Thioesterase Superfamily; Phenylacetic Acid Degradation-Like Protein; Thioesterase Family Protein Domain Protein; Protein Possibly Involved In Aromatic Compounds Catabolism

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAAFLEVTSVITL
QWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATG
HFLMPQERPSGN

Sequences:

>Translated_172_residues
MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAAFLEVTSVITL
QWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATG
HFLMPQERPSGN
>Mature_171_residues
SRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPMLPAIHGGATAAFLEVTSVITLQ
WFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRSGLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATGH
FLMPQERPSGN

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19329; Mature: 19198

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPML
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC
PAIHGGATAAFLEVTSVITLQWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRS
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHC
GLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATGHFLMPQERPSGN
CCCCCCHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRPRPEPVQVIKQRRDAALAALVESVPYIGFLGITFERRGDELTSTMHFHENIIGNPML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCC
PAIHGGATAAFLEVTSVITLQWFHLWPQFESGELDVETMAAGQMPRLPKTIDFTVDYLRS
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHC
GLPRDSYARATVNRSGRRYASVHVAAWQDHKEKLFAQATGHFLMPQERPSGN
CCCCCCHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA