Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081374

Identifier: 99081374

GI number: 99081374

Start: 1637844

End: 1639151

Strand: Direct

Name: 99081374

Synonym: TM1040_1533

Alternate gene names: NA

Gene position: 1637844-1639151 (Clockwise)

Preceding gene: 99081373

Following gene: 99081375

Centisome position: 51.17

GC content: 60.93

Gene sequence:

>1308_bases
ATGGCAGACGTCGCGCCTTTTCCGGCGCCCGATCAAAGCAGCGCTCAACGCGCCGCCCCCACATCCACCGGCGCCGATGG
TGCAGGCCCCCTCGCGGGGGCCACGGCGCAGCTGCGCCCGGATGTGCAGGGGCGCCCGCGCGACCCGCGACTTGATTTTT
ATCGCGGCATCGCGATGTTCATCATCCTCTGCGCGCATATCCCGGGCAATCGCTGGACAGGCTGGATTCCGGCCCGCTTT
GGCTTTTCCGACGCAACCGAGATCTTTGTGTTCTGCTCCGGCATGGCTTCCGCGATTGCCTTTGGCGGCTCTTTCCAGCG
CCACGGCTGGTGGTTGGGCACCGCGCGCGTCGCCTACCGCTGCTGGCAGGTGTTCTGGGCGCATATTGGCCTCTTTTTCT
TTGTGGCCATGTCGATGGCCGCGCTCGATCTCTATGGCGGGTTTGAGAAAAGCTACATCGGCTCATTGAACCTGAGACCG
TTTTTCAACGATCCCGCAGAGCAGATCGTGGGGATTTTCACCCTCACCTATGTGCCGAACTACTTTGACATTCTGCCGAT
GTATCTGGTGGTGCTGGCCTTGATGCCTGCGATTATGAGCGCGCAGAAACTCGGCCTCTGGGCTGTGGCGGGGCTGTCGC
TGGCGCTCTGGCTTCTGGCCAACCCTTATGTTGTCGGACTTGGTCCCGAAGGCCTGTCGCTGCCCGCAGAGCCTTGGTCG
GACCGCGAGTGGTTCTTCAACCCTTTCGGCTGGCAGCTTTTGTTCTTTACCGGTTTTGCCTTTATGGCAGGCTGGCTTCC
CAAACCGCCGGTCAGCCGCGGACTGGCACTGTTAGCGGCCGCCTTCTTGATCCTGTCGATGCCTTTTGGCTCGTGGAAGG
TCTTCAGCTGGCTCAACAGTGCGGCCCCCGACCTGGGCGCAACGATCCGCCCTGCATGGGGCATCACCGGAGAGTGGCGC
GAGAAAACCGACTTTGGCCTTCTGCGCTATCTGCATTTCTTGTCGCTGGCTTACCTGGCATGGCTTGTGGCCGGTGAGAA
CGGGCAAAACCTCGTGGCCCGTGGCAGCTCTTTGGCCGCGCGCTTCTGGGCTCAGATCCTGACGCTCATCACCAAGGTCG
GCCAGCAAAGCCTTGCTGTCTTTGTCTTTTCCATGGCGCTTGCCCGTTTCATTGGCGCGGCTCTGGATCAAACCGAGCGC
GGCATCCTTGTGACCGCGTTGGCCAATATCACTGGCTTCACTCTCATTATCGGCTGCGCTTTTGCAGCCGGCTGGTTCAA
ATCCCAACCCTGGAGACGCAAACGATGA

Upstream 100 bases:

>100_bases
AATTATGCGATGGCCCGTCGCGCCTTGATTGCGGCCGCCCAAAGCGAGGGCGGCGCACAGAGCGTCCCGGCGGAGTGATC
CTTTAGGAGATTTGAAAAAG

Downstream 100 bases:

>100_bases
GCACATTCAGCCGTCGTTCCTTCCTTCAATTCGCCTCTGCCCTGTCACTTGCGGCACTGGCCCCCGCCGCGCGCGCCAGC
GCCTCCGAGGAAGCGTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; Transmembrane Protein OpgC

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGNRWTGWIPARF
GFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRP
FFNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS
DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWR
EKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTER
GILVTALANITGFTLIIGCAFAAGWFKSQPWRRKR

Sequences:

>Translated_435_residues
MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGNRWTGWIPARF
GFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRP
FFNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS
DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWR
EKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTER
GILVTALANITGFTLIIGCAFAAGWFKSQPWRRKR
>Mature_434_residues
ADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMFIILCAHIPGNRWTGWIPARFG
FSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYRCWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRPF
FNDPAEQIVGIFTLTYVPNYFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWSD
REWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNSAAPDLGATIRPAWGITGEWRE
KTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAARFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERG
ILVTALANITGFTLIIGCAFAAGWFKSQPWRRKR

Specific function: Unknown

COG id: COG4645

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47812; Mature: 47681

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMF
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHH
IILCAHIPGNRWTGWIPARFGFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYR
HHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHH
CWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRPFFNDPAEQIVGIFTLTYVPN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
YFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNS
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AAPDLGATIRPAWGITGEWREKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHH
RFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERGILVTALANITGFTLIIGCA
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
FAAGWFKSQPWRRKR
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
ADVAPFPAPDQSSAQRAAPTSTGADGAGPLAGATAQLRPDVQGRPRDPRLDFYRGIAMF
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHH
IILCAHIPGNRWTGWIPARFGFSDATEIFVFCSGMASAIAFGGSFQRHGWWLGTARVAYR
HHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHH
CWQVFWAHIGLFFFVAMSMAALDLYGGFEKSYIGSLNLRPFFNDPAEQIVGIFTLTYVPN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
YFDILPMYLVVLALMPAIMSAQKLGLWAVAGLSLALWLLANPYVVGLGPEGLSLPAEPWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
DREWFFNPFGWQLLFFTGFAFMAGWLPKPPVSRGLALLAAAFLILSMPFGSWKVFSWLNS
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AAPDLGATIRPAWGITGEWREKTDFGLLRYLHFLSLAYLAWLVAGENGQNLVARGSSLAA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHH
RFWAQILTLITKVGQQSLAVFVFSMALARFIGAALDQTERGILVTALANITGFTLIIGCA
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
FAAGWFKSQPWRRKR
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA