Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081329

Identifier: 99081329

GI number: 99081329

Start: 1591016

End: 1593580

Strand: Direct

Name: 99081329

Synonym: TM1040_1488

Alternate gene names: NA

Gene position: 1591016-1593580 (Clockwise)

Preceding gene: 99081328

Following gene: 99081330

Centisome position: 49.7

GC content: 59.65

Gene sequence:

>2565_bases
ATGGCAACGATGAACTCAGGCCTCGGCGGTGCGACGGGGTATGGTGAAAACAGCTTTGTCACGAATGGGCCGGACAGCGG
CACCCTCGATGATGGCAGCGTTTATGTTGATATCACCTCGGTGTTCGGCCCTGGAGGGATCACGCTCTTTGGCCAGAACT
ATACCGGGTTCAACGTCGGCACCAACGGTGTCATTGGTTTTGATTGGGACAGCACCACCTACAACCCCGAGGGCCTCGAA
GGTTTTAACCAAGGCCCACTGATCGCACCGCTGTGGACCGATATGGATCTCAGCCAGGGCGGCGACATCCTGTGGGATCT
CGACACGGTCAACGGCACGGTCACGATCACCTGGCTCGATGTTGCCCCCTCTTCGGGCGCCGGCACGAACTCCTTTCAGG
TTGTGCTGACCGATACAGGCGGCGGCAACTTTGATCTCGAGTTTATCTATGAGGACATCCAGTATGGTGATGGCGACACG
CTCGGCAACAGCGTCGGCCTGACCGATGGCAATGGAAATGTCTACGAACTCGAAGGCTCACGCGATACCAATGACGCCAC
CCAATACGAGACCACAAGCTTTGACAGTGGCCCGGCCCCGGGTCATTTCTCGACCTCGGTTGTAGATGGCACACCGGACG
TCTATTCCATCGACGGCACCTCCGGCGCGGACAACATGGACGTCGGCTATACCGACGCCGATGGGCAGGACATCACCAAT
CAGGATGACTACATCCTTGCTGGCGACGGCAATGACACCATTCGCGGAGGCGAGGGAGACGACACGATTGTCGGCGGCGC
TGGCGATGATGTGATCTACAGCGGCAGCGATTCAGACGCTGCGGCGCCGACCTATGTGCAGGTGTACAACGGCGACAATT
ATCACGGCACAACCGGTCAGGACTTCTATCACTGGAATGCGGAAACAGGCAGCAACGCCGTCATCCGCATGAACAATACG
CCCACCGAGTCGGGCTCTGGCGATGGCGAGGCTGACTATGTGGTTGTCGGAACCACCAACAACACCGGCACCCTGACCAT
TGGCGACTTTGACGTCGGCAATGACCGGATCGTACTGCCCGAGGCCTATGCTTCGATTTCGATGACCAACGCGTCCTCGC
CGACAGATTATTATTCCGACATTACAATTACATATGCGAACGGCAATACGCAGAGCTTTGTGATCTATCACGACGGCTCC
ACGCCGCTTACTGCCAGCGAGGTCTTCACCACCGAGGTTCCGACTGTCACTGCAAGCGACAACGATCAGCTCATCGGGGG
CGAAGGCGACGACACTTTTATCCTCGAAGATCACTCCGGGAATGACACGATCGATGGGGGTGCGGGTGAAGGCGATCACA
TTGACGCGTCCAACCTGTCTGGGCCGGTTTCGGTTACCTATTCGGGGGATGAGGCCGGGGACATCGTCAGCGGGTCGGAT
ACGATCACCTTCAGCGACATCGAGCAGATCACCCTGACCAATCAGGCTGATTTTTTTGATGCCAGCGCTGCTGCCACCGG
CGTATCTCTGGATGCAGGGACCGGGGATGACACCATCATCGGCTCCAGCGGCAATGACACGCTCTCCAGCGGCATCGGCC
ATGACACCATCACCGGGGGCCTGGGTGATGACGTGATGACAAGCGCCGGTGGGGAGGACCTCTTTGTCCTTACCACCAGC
GGCGGGCGCGACACCATCACCGATTTTGGTACCGGCGATCTGGATGGCGATGGGCGCTTCAACGACCAGCTCGATGTGTC
CAATCTCTCGGGCGGTACAGGACCTGGCGGCAGCGTCACACGAAACGATGTTGTCGTCAGCGACGATGGCAGCGGCAATG
CGGTGCTGACGTTCCCGGATGGCGAGCAGCTGGTGCTCCTTGGCGTGCCACCGACCTTTATGTCTGCCCCGGCCAATCTC
TATTCTGCGGGCATTCCCTGTTTCACCACGGGCACACTGATCGACACTGCGACGGGGCCACGTCCGGTTGAGACACTCCG
GGTCGGCGATCTGATGCAGACGGCTGATGAGGGCTGCCAACCCGTGATCTGGATTGGAACAACCCATGTTCCCCATAGCG
CACTCATGTCCAATCCGCGGCTGAGGCCCATCACACTGCACCCAGGCGGGAGCCTTCAACTGGCGCAGCCCATGACGGTG
TCGCGTCAGCACCGGTTCGTGTTCGCCGACCCACAGGATCGGACCGAGCGTTTCCTGCGCGCCAATCAACTCCTTCAGGT
AGCGCCGGATCAGGTCAGTGTTGATTGCCCTCTAGGCGGCGTCACCTATGTTCATGTCCTGCTTGAGCGGCACCAGGTCT
TGTTTTCCGGCGGCGTCGCAACGGAGAGCTTTTTCCCCGGCCCCTGGTCTTTGCGCGGGCTCTCGCCTCGCTCCGTGGCA
AAGCTCGCCGCTTTGCTGCCCCGGTTGCGCTATTTGCACGGGTTGCCCCCCAAACTCGCGAGAATGGCGACCGAGCAGGT
CTATGCTCCGCTGGCACGCGATGAAATCAGCACCGCAGAGTTGCGAGAGAGACTGCGCGCCACCCGTCTGAAACAAAGCG
CCTGA

Upstream 100 bases:

>100_bases
TCAACAGGAACTTAAGAATTTTCGCATAAAACGATGATGAGCCCTGTTCAATTGGCCCGGTAACAAGAAGCTGCCCCTCT
TGCAGGGGCTGGAAGAGTAA

Downstream 100 bases:

>100_bases
AACGGTGCCCAGTCGCGGCAGGCCGCCACAGGGCCACATTCTGCGCGCAAACGCCGCAGCCCACTCGAACACAATCCCAA
CTGATACCGGCGACGCCAAT

Product: hemolysin-type calcium-binding region

Products: NA

Alternate protein names: Type I Secretion Target Repeat-Containing Protein; YD Repeat Protein; Nidogen Extracellular Region; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase

Number of amino acids: Translated: 854; Mature: 853

Protein sequence:

>854_residues
MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWDSTTYNPEGLE
GFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDT
LGNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN
QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNT
PTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGS
TPLTASEVFTTEVPTVTASDNDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD
TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTS
GGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANL
YSAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV
SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVATESFFPGPWSLRGLSPRSVA
KLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAELRERLRATRLKQSA

Sequences:

>Translated_854_residues
MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWDSTTYNPEGLE
GFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDT
LGNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN
QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNT
PTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGS
TPLTASEVFTTEVPTVTASDNDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD
TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTS
GGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANL
YSAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV
SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVATESFFPGPWSLRGLSPRSVA
KLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAELRERLRATRLKQSA
>Mature_853_residues
ATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVGTNGVIGFDWDSTTYNPEGLEG
FNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLDVAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDTL
GNSVGLTDGNGNVYELEGSRDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITNQ
DDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQDFYHWNAETGSNAVIRMNNTP
TESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLPEAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGST
PLTASEVFTTEVPTVTASDNDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSDT
ITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGGLGDDVMTSAGGEDLFVLTTSG
GRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVTRNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANLY
SAGIPCFTTGTLIDTATGPRPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTVS
RQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVATESFFPGPWSLRGLSPRSVAK
LAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAELRERLRATRLKQSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 89160; Mature: 89029

Theoretical pI: Translated: 3.71; Mature: 3.71

Prosite motif: PS00330 HEMOLYSIN_CALCIUM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVG
CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCC
TNGVIGFDWDSTTYNPEGLEGFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLD
CCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEE
VAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDTLGNSVGLTDGNGNVYELEGS
ECCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEECCC
RDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN
CCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCC
QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQ
CCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCC
DFYHWNAETGSNAVIRMNNTPTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLP
CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEECEECCCCEEECC
EAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGSTPLTASEVFTTEVPTVTASD
CCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHEEEECCCEEEECC
NDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD
CCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCC
TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGG
EEEECCCEEEEEECCCCCCCCCHHHCCEEEECCCCCCEEEECCCCCHHHCCCCCCCCCCC
LGDDVMTSAGGEDLFVLTTSGGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVT
CCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
RNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANLYSAGIPCFTTGTLIDTATGP
CCCEEEECCCCCCEEEECCCCCEEEEEECCHHHHCCCCHHHHCCCCEEECCCEEECCCCC
RPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV
CCHHEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCEEECCCCEE
SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVA
CCCCEEEEECCHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHEEEECCCC
TESFFPGPWSLRGLSPRSVAKLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHH
LRERLRATRLKQSA
HHHHHHHHHHHCCC
>Mature Secondary Structure 
ATMNSGLGGATGYGENSFVTNGPDSGTLDDGSVYVDITSVFGPGGITLFGQNYTGFNVG
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCC
TNGVIGFDWDSTTYNPEGLEGFNQGPLIAPLWTDMDLSQGGDILWDLDTVNGTVTITWLD
CCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEE
VAPSSGAGTNSFQVVLTDTGGGNFDLEFIYEDIQYGDGDTLGNSVGLTDGNGNVYELEGS
ECCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEECCC
RDTNDATQYETTSFDSGPAPGHFSTSVVDGTPDVYSIDGTSGADNMDVGYTDADGQDITN
CCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCC
QDDYILAGDGNDTIRGGEGDDTIVGGAGDDVIYSGSDSDAAAPTYVQVYNGDNYHGTTGQ
CCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCC
DFYHWNAETGSNAVIRMNNTPTESGSGDGEADYVVVGTTNNTGTLTIGDFDVGNDRIVLP
CEEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEECEECCCCEEECC
EAYASISMTNASSPTDYYSDITITYANGNTQSFVIYHDGSTPLTASEVFTTEVPTVTASD
CCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHEEEECCCEEEECC
NDQLIGGEGDDTFILEDHSGNDTIDGGAGEGDHIDASNLSGPVSVTYSGDEAGDIVSGSD
CCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCC
TITFSDIEQITLTNQADFFDASAAATGVSLDAGTGDDTIIGSSGNDTLSSGIGHDTITGG
EEEECCCEEEEEECCCCCCCCCHHHCCEEEECCCCCCEEEECCCCCHHHCCCCCCCCCCC
LGDDVMTSAGGEDLFVLTTSGGRDTITDFGTGDLDGDGRFNDQLDVSNLSGGTGPGGSVT
CCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
RNDVVVSDDGSGNAVLTFPDGEQLVLLGVPPTFMSAPANLYSAGIPCFTTGTLIDTATGP
CCCEEEECCCCCCEEEECCCCCEEEEEECCHHHHCCCCHHHHCCCCEEECCCEEECCCCC
RPVETLRVGDLMQTADEGCQPVIWIGTTHVPHSALMSNPRLRPITLHPGGSLQLAQPMTV
CCHHEEEHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCEEEEEECCCCCEEECCCCEE
SRQHRFVFADPQDRTERFLRANQLLQVAPDQVSVDCPLGGVTYVHVLLERHQVLFSGGVA
CCCCEEEEECCHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHHHEEEECCCC
TESFFPGPWSLRGLSPRSVAKLAALLPRLRYLHGLPPKLARMATEQVYAPLARDEISTAE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCHHH
LRERLRATRLKQSA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA