| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081327
Identifier: 99081327
GI number: 99081327
Start: 1587568
End: 1588521
Strand: Reverse
Name: 99081327
Synonym: TM1040_1486
Alternate gene names: NA
Gene position: 1588521-1587568 (Counterclockwise)
Preceding gene: 99081333
Following gene: 99081326
Centisome position: 49.63
GC content: 57.76
Gene sequence:
>954_bases ATGCGGTTATCATCTCACAACCTCCCTGATACGACTGCGCCGTCGCGCCCACATGTGACCGTGTTTTGTGCGGTCTGGCA CAAACAGCCAAACAAGCTGGAGTTGCTGAAATCCCATTGGGACAATCTAAAACGGCAAAGCATCCCGGTAGAGCCTTGTT ATATTTTCGACAATGGGGACACCGCGCCCGAATGGCTGGCCGCACCGTGGCACTCCTTCTCCGAGCCTCTGACCATCTAC GAGGCATGGGCAGCAGGGGTGGCGCTTGCGCGCACCCGGTTCGTCATGAACCTCAACATGGATGACCGGCTGAGCACGGA TGCGGCTGAAATGATGCTGCGCGGGCTTTTGCAGACGGATACAGCCTTGATTGGCGGTGAATGGATCATCCAGTTCGACC ACGCGTTTCAGACGGAGGTCTTTGGGTCGAGCGATCCTAAACAAACCTGTTTTGAGCCCGCTTGGCCCCCCGCTCCGATT GAGGGCGATAAACGTTTGCGCCTCGGAAGCGGCACGGGCGAGCGGGGTACGCTTGGGCCTGCAACGCTTTGGGATCTTGA GAAAACTCAGCGCTGGTATCCAACTCATTTCGGCAATCGCGACCCGATCCTGTCGATTGGCGATGCGATTTTCTGGCAGC ATCTGCACAAGAAAAAACTGCGCACCGCGCGGCTGCCTCTGGTTATTGGGCGGTATTTTTCCTCACCGGATGCGCAGGCC GAGTTCCGCCCGCACAATGACGAGGAAAACCTGCGCACCCATGGTGTGCATGAGGTGTCTTTTGCCCAGAGCATAACAGC CACACGGAACGCGATGCCCCAACCGGCACCGCAAGGCGCGTCCCCGTTTCCAAAATCGCGCAACGCAATAGAAAACGAAA GCCAGGCTCTCGCGCTAAAATATCTTGGTCTTCTGGGCCATGGCACTCCGGCCGCGTCACATCCCCGAGCATGA
Upstream 100 bases:
>100_bases TTTTCTCATTCTAGATTAACTGCACCTTAAACTCTGGGCTTTATTAAAACTTTCACGAGCCACGCGACGTGGAACTTTTG ACGAGGAAACGGCCTGGAAG
Downstream 100 bases:
>100_bases GCCAGCCCCTTCGCATATTTCTGACCGGCAGTGGCGGCATCCTTGGCAGGCATGTTTCAACCGCGCTCCTGGCTCATGCG CCAGGCGCGCAGGTTTTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPWHSFSEPLTIY EAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPI EGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA
Sequences:
>Translated_317_residues MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPWHSFSEPLTIY EAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPI EGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA >Mature_317_residues MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGDTAPEWLAAPWHSFSEPLTIY EAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTDTALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPI EGDKRLRLGSGTGERGTLGPATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALKYLGLLGHGTPAASHPRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35508; Mature: 35508
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGD CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC TAPEWLAAPWHSFSEPLTIYEAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTD CCHHHHHCCHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC TALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPIEGDKRLRLGSGTGERGTLGP CEEECCEEEEEECCCHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC ATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA HHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALK CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHH YLGLLGHGTPAASHPRA HHHHHCCCCCCCCCCCC >Mature Secondary Structure MRLSSHNLPDTTAPSRPHVTVFCAVWHKQPNKLELLKSHWDNLKRQSIPVEPCYIFDNGD CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC TAPEWLAAPWHSFSEPLTIYEAWAAGVALARTRFVMNLNMDDRLSTDAAEMMLRGLLQTD CCHHHHHCCHHHCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC TALIGGEWIIQFDHAFQTEVFGSSDPKQTCFEPAWPPAPIEGDKRLRLGSGTGERGTLGP CEEECCEEEEEECCCHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC ATLWDLEKTQRWYPTHFGNRDPILSIGDAIFWQHLHKKKLRTARLPLVIGRYFSSPDAQA HHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC EFRPHNDEENLRTHGVHEVSFAQSITATRNAMPQPAPQGASPFPKSRNAIENESQALALK CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHH YLGLLGHGTPAASHPRA HHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA