Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081294

Identifier: 99081294

GI number: 99081294

Start: 1551847

End: 1553010

Strand: Direct

Name: 99081294

Synonym: TM1040_1453

Alternate gene names: NA

Gene position: 1551847-1553010 (Clockwise)

Preceding gene: 99081293

Following gene: 99081295

Centisome position: 48.48

GC content: 56.01

Gene sequence:

>1164_bases
ATGCGTCAAACGCGCTTCTTTAAAATGGCGCAACGAGCAGATTCAATTTTCGACGGAGGCATCACAGGCATGCCCACCCA
TGACTTTTTTGTCTACACGCCGGATGCGCTGACGTTTTCCGGCGGTACGATCCGCGTAAACTCTGGTTTTGACCCGCTTT
CTGATCGGCGCGTTGTGTCTCTCACAGATGACGATTCCACGCTGGATGGGGATTTCACCCGAAATGAGCGCGGTATCGAC
AGCAACCAGCGGGCAACGGTTTTTGAAAGCGATGGCAGCACATTGGCGCGTATCGGCGGAGATTTTGTGCAAAACGACCA
AGTCTATGCAGAAAATCAATATGTGCTGACCGGCGATGATGGCAGCGAAATTACCGTTTATGCGCTGGAAAGCGGCGGCA
CACTTATTGGCTATCTTCCAACTGCGCCGCTTTTACGGGATGTGAATTACAGCTACCGGACCCACAATGTCATCAACGAT
GACGAGCTGACGGGCTCCTATCAATATTGGTATCGTCAATACCTCGGCGAGGACGCGACCGATGCCGGATCCTATGATGA
CATTCAGGGGGCCGTGATCGTGTGTTTTACGCCCAACGCGCAGGTCACCACCCCGGAAGGTCCGCGCCGCATCCGGGATC
TTGCCGTGGGCGATCGCGTGCTGACACGGGACAATGGTTATCAGACCCTGCGGTGGAAATATCACCGCCGCCTGTCACGC
GCAGATCTCGACCGTCAACCGCATCTGGCGCCAATCATCTTTGAGCCAGACGCACTGGCGCCGGGCTGCCCCAAACGCCG
CCTCAAAGTGTCTCCACAGCACCGGATTCTCATTGAATCCCACATGAGCGGGCTCCTCTTTGCCAGCAATGCCATCCTCG
CACCGGCCAAGGGGCTGGTGAACGGCACCAGTGTGCGACAGGATCAAAGTGGCATGCCGGTCACCTATGTGCATCTGATG
TTTGATCGCCATGAGGTGATCGAGGCCGATGGGCTCTATTCCGAAAGCTACCATCCCGGTGCCTGGGCGCTTGCGGCTGC
CGAAGATGCGGTCCGGCGCGAGCTTTTTGAGATATTCCCGGCTCTGGAGGCGGATCTCAATGCCTATGGCCCTACATGTT
ATCCCTCTATAAATGCTCAAGAAGCACGTCTACTGAAGGCATGA

Upstream 100 bases:

>100_bases
ATCACAGCACAGGCGCCATTTTCAAAGCGCCCTGCTCTGCGCGCGGCCCCATATTTGCGTTAGCAATTTCTTTACCTTTT
TACATTTCGCGCGCATACTG

Downstream 100 bases:

>100_bases
GATCATGATTGGCGAACGGCCCAAGAAACGCTCCCTCACCCTGCGCGGTCACCGGACCTCGGTCTCGCTGGAGGATGCTT
TCTGGAGCGAATTTCGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDGDFTRNERGID
SNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVIND
DELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR
ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLM
FDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA

Sequences:

>Translated_387_residues
MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDGDFTRNERGID
SNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVIND
DELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR
ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLM
FDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA
>Mature_387_residues
MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVSLTDDDSTLDGDFTRNERGID
SNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDDGSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVIND
DELTGSYQYWYRQYLGEDATDAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR
ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLVNGTSVRQDQSGMPVTYVHLM
FDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFPALEADLNAYGPTCYPSINAQEARLLKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43097; Mature: 43097

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50817 INTEIN_N_TER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVS
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCEEEECCCCCCCCCCEEEE
LTDDDSTLDGDFTRNERGIDSNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDD
ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHCCCHHCCCEEEECCEEEEECCC
GSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVINDDELTGSYQYWYRQYLGEDAT
CCEEEEEEEECCCEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC
DAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR
CCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHH
ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLV
HCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEECCCEECCCCCCC
NGTSVRQDQSGMPVTYVHLMFDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFP
CCCCCCCCCCCCCEEEEEEEECCHHHEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
ALEADLNAYGPTCYPSINAQEARLLKA
HHHHCCCCCCCCCCCCCCHHHHHEECC
>Mature Secondary Structure
MRQTRFFKMAQRADSIFDGGITGMPTHDFFVYTPDALTFSGGTIRVNSGFDPLSDRRVVS
CCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCEEEECCCCCCCCCCEEEE
LTDDDSTLDGDFTRNERGIDSNQRATVFESDGSTLARIGGDFVQNDQVYAENQYVLTGDD
ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHCCCHHCCCEEEECCEEEEECCC
GSEITVYALESGGTLIGYLPTAPLLRDVNYSYRTHNVINDDELTGSYQYWYRQYLGEDAT
CCEEEEEEEECCCEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC
DAGSYDDIQGAVIVCFTPNAQVTTPEGPRRIRDLAVGDRVLTRDNGYQTLRWKYHRRLSR
CCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHCCEEEECCCCCEEEHHHHHHHHHH
ADLDRQPHLAPIIFEPDALAPGCPKRRLKVSPQHRILIESHMSGLLFASNAILAPAKGLV
HCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCEEEECCCEECCCCCCC
NGTSVRQDQSGMPVTYVHLMFDRHEVIEADGLYSESYHPGAWALAAAEDAVRRELFEIFP
CCCCCCCCCCCCCEEEEEEEECCHHHEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
ALEADLNAYGPTCYPSINAQEARLLKA
HHHHCCCCCCCCCCCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA