| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ygfJ [C]
Identifier: 99081274
GI number: 99081274
Start: 1530278
End: 1530904
Strand: Direct
Name: ygfJ [C]
Synonym: TM1040_1433
Alternate gene names: 99081274
Gene position: 1530278-1530904 (Clockwise)
Preceding gene: 99081273
Following gene: 99081288
Centisome position: 47.81
GC content: 63.48
Gene sequence:
>627_bases ATGAACGCTGGCCCGTCACAACATATGCCGAAATTGGCCATTCTCCTGCTGGCGGCGGGCGCATCGTCACGAATGCGCGG GCGTGACAAATTGTTGGAACAGGTGAACGGCCGCCCCCTGGTTGCGGGGCTGAGCGATGCGGCGCGCGCATCGGGATGTG AGGTCTATGTGACTGTGCCGCATCTCGAACACCCGCGCGCCAGTGCTGCGGGCGAGGCTCATCTGGTTGCGGTTCCGAAT GCGGTCGAAGGATTGAGTGCCTCGCTCCGCGCGGGCATCACCGCTCTGGCGGGCGATATCGACGGTGTCATGGTGTTGCC AGCCGACATGCCCGAAATCACTGCTGCGGATTTCCTGAAAATGGCAGAGCAATTTGCCGGTCCAGAGGGGGCTATTCTAC GTGCAAGCGGCACAGATCAAAGCGGCGCTCGCCGAGCAGGTCACCCCGTGCTGTTTCCACGCCGATGCTTTGATGCGCTG CAAACGCTCACGGGCGATGCGGGCGCGCGGGAACTTCTCAAACAGGAGGCGGTGCAGTTGATCGCGCTGCCGGGCGCGCA TGCGCTCACGGATCTGGACACGCCCGAAGACTGGACCAAGTGGCGCGCGCGCCAAGGTGACGTCTGA
Upstream 100 bases:
>100_bases CGGCCTTTGTCACCGCCGATGTGCCCTCTGAAAAGGTGCTTGAGGTGCTGCAAGAGGCGCTGGCGCATACACAACCCGCC TGATCTCGATGGGGCAAGAG
Downstream 100 bases:
>100_bases TCAGTGCAGCAACATCCGCGCTTCGCGTTCCTTCAACTCGCGCCGTGCCGAGGGATAGGCCTTTTGCCCTTCCTTGGTGC GAAGTTCGGGAAACAGTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Purine Catabolism Protein PucB; Protein Family UPF; Molybdopterin Biosynthesis; Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A; Molybdenum Hydroxylase Accessory Protein YgfJ Family; L-Seryl-TRNA(Ser) Selenium Transferase Protein; MobA-Like Protein-Like Protein; Molybdopterin Molybdochelatase; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; Molybdenum Cofactor Cytidylyltransferase; Molybdenum Cofactor Biosynthesis Protein
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAAGEAHLVAVPN AVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDAL QTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV
Sequences:
>Translated_208_residues MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAAGEAHLVAVPN AVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDAL QTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV >Mature_208_residues MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVPHLEHPRASAAGEAHLVAVPN AVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLKMAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDAL QTLTGDAGARELLKQEAVQLIALPGAHALTDLDTPEDWTKWRARQGDV
Specific function: Unknown
COG id: COG2068
COG function: function code R; Uncharacterized MobA-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21766; Mature: 21766
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVP CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCEEEEECC HLEHPRASAAGEAHLVAVPNAVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLK CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH MAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDALQTLTGDAGARELLKQEAVQL HHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHE IALPGAHALTDLDTPEDWTKWRARQGDV EECCCCHHHCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure MNAGPSQHMPKLAILLLAAGASSRMRGRDKLLEQVNGRPLVAGLSDAARASGCEVYVTVP CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCEEEEECC HLEHPRASAAGEAHLVAVPNAVEGLSASLRAGITALAGDIDGVMVLPADMPEITAADFLK CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH MAEQFAGPEGAILRASGTDQSGARRAGHPVLFPRRCFDALQTLTGDAGARELLKQEAVQL HHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHE IALPGAHALTDLDTPEDWTKWRARQGDV EECCCCHHHCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA