Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081219

Identifier: 99081219

GI number: 99081219

Start: 1472383

End: 1473192

Strand: Direct

Name: 99081219

Synonym: TM1040_1378

Alternate gene names: NA

Gene position: 1472383-1473192 (Clockwise)

Preceding gene: 99081218

Following gene: 99081220

Centisome position: 46.0

GC content: 56.91

Gene sequence:

>810_bases
ATGTCCGGGCTTGGAAAAACCTATATCAGCAACATCCTGCGCCGCTCCGGTCAGTGGTTTCATTACTCTGCCGATTACCG
CATCGGGACGCGCTATATGGGCGAATATATCGCGGACAATGCCAAGGCGGAGGCGATGAAAGTCCCGTTTCTGCGCGATC
TGCTGCTGTCGGATTCGATTGATATTTCCTCCAATATCACCTTTGAAAACCTGAGCGCCGTAACCGCCTATCTCGGGGTG
CCGGGTGACGCCCAAAAGGGCGGCCTGCCCATCGAGGAGTACCGCACCCGCCAGGACCAGTTCCGCCGCGCCGAAATCGA
CGCGCTGCTGGATACGCGCTATTTCATCGACCGTTCCGACCGCATTTACGGCTATCCGCATTTCATCTGCGATTCCGGGG
GCTCGATCTGCGAGTGGGTCGATGCAAATGACCCCAATGATCCGCTCTTGAGCGAACTCAGCGCGCATACGCTTCTGGTC
TGGATCAAAGGCACCGAGGATCACACGCAAGAGCTCATTCGTCGGTTTGATCGCGCCCCAAAGCCAATGGCCTATCAGCC
CGCCTTCCTCACCCGTGTTTGGGAGGAATATCTGAATGAAAACAACATCACAGACGCAGATGTTGATCCTCATGCCTTCT
TGCGCTGGACCTATGCGCAGGCGCTTGCGCACCGTCAGCCCCGCTATGAGGCGATGGCCGCACATTGGGGCGTGACGGTC
ACGGCAGATCAGGTGGCACACGTCCAGAACACAAGCGATTTCGAGGAGTTGATTGCATCCGCTCTTGAGACACGAGCGGA
ACAGACTTAA

Upstream 100 bases:

>100_bases
GCAAGGCAGCGTAGACCGCGAATAAGGCAGCAGTTTCATGCTATATACCTCCGCTCAGGCGTGGCGCGACGCGCCCTCAA
AACGGGTTCTTTTCTTCGGC

Downstream 100 bases:

>100_bases
TTAACGGCACCCTGCTACTTTTAGCGCACCCACAAAGGACACGACATGCCTATCAAGATCCCCGCTGACCTGCCCGCCTA
CTCCGTCCTGTCGGACGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSGLGKTYISNILRRSGQWFHYSADYRIGTRYMGEYIADNAKAEAMKVPFLRDLLLSDSIDISSNITFENLSAVTAYLGV
PGDAQKGGLPIEEYRTRQDQFRRAEIDALLDTRYFIDRSDRIYGYPHFICDSGGSICEWVDANDPNDPLLSELSAHTLLV
WIKGTEDHTQELIRRFDRAPKPMAYQPAFLTRVWEEYLNENNITDADVDPHAFLRWTYAQALAHRQPRYEAMAAHWGVTV
TADQVAHVQNTSDFEELIASALETRAEQT

Sequences:

>Translated_269_residues
MSGLGKTYISNILRRSGQWFHYSADYRIGTRYMGEYIADNAKAEAMKVPFLRDLLLSDSIDISSNITFENLSAVTAYLGV
PGDAQKGGLPIEEYRTRQDQFRRAEIDALLDTRYFIDRSDRIYGYPHFICDSGGSICEWVDANDPNDPLLSELSAHTLLV
WIKGTEDHTQELIRRFDRAPKPMAYQPAFLTRVWEEYLNENNITDADVDPHAFLRWTYAQALAHRQPRYEAMAAHWGVTV
TADQVAHVQNTSDFEELIASALETRAEQT
>Mature_268_residues
SGLGKTYISNILRRSGQWFHYSADYRIGTRYMGEYIADNAKAEAMKVPFLRDLLLSDSIDISSNITFENLSAVTAYLGVP
GDAQKGGLPIEEYRTRQDQFRRAEIDALLDTRYFIDRSDRIYGYPHFICDSGGSICEWVDANDPNDPLLSELSAHTLLVW
IKGTEDHTQELIRRFDRAPKPMAYQPAFLTRVWEEYLNENNITDADVDPHAFLRWTYAQALAHRQPRYEAMAAHWGVTVT
ADQVAHVQNTSDFEELIASALETRAEQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30737; Mature: 30605

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLGKTYISNILRRSGQWFHYSADYRIGTRYMGEYIADNAKAEAMKVPFLRDLLLSDSI
CCCCHHHHHHHHHHHCCCEEEEECCCEEHHHHHHHHHHCCCHHHHHCCHHHHHHHHCCCC
DISSNITFENLSAVTAYLGVPGDAQKGGLPIEEYRTRQDQFRRAEIDALLDTRYFIDRSD
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RIYGYPHFICDSGGSICEWVDANDPNDPLLSELSAHTLLVWIKGTEDHTQELIRRFDRAP
CEECCCCEEECCCCCEEEECCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCC
KPMAYQPAFLTRVWEEYLNENNITDADVDPHAFLRWTYAQALAHRQPRYEAMAAHWGVTV
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEE
TADQVAHVQNTSDFEELIASALETRAEQT
EHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGLGKTYISNILRRSGQWFHYSADYRIGTRYMGEYIADNAKAEAMKVPFLRDLLLSDSI
CCCHHHHHHHHHHHCCCEEEEECCCEEHHHHHHHHHHCCCHHHHHCCHHHHHHHHCCCC
DISSNITFENLSAVTAYLGVPGDAQKGGLPIEEYRTRQDQFRRAEIDALLDTRYFIDRSD
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RIYGYPHFICDSGGSICEWVDANDPNDPLLSELSAHTLLVWIKGTEDHTQELIRRFDRAP
CEECCCCEEECCCCCEEEECCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCC
KPMAYQPAFLTRVWEEYLNENNITDADVDPHAFLRWTYAQALAHRQPRYEAMAAHWGVTV
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEE
TADQVAHVQNTSDFEELIASALETRAEQT
EHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA