Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081213

Identifier: 99081213

GI number: 99081213

Start: 1464883

End: 1465929

Strand: Reverse

Name: 99081213

Synonym: TM1040_1372

Alternate gene names: NA

Gene position: 1465929-1464883 (Counterclockwise)

Preceding gene: 99081215

Following gene: 99081212

Centisome position: 45.8

GC content: 57.59

Gene sequence:

>1047_bases
ATGAATGGAGTAACCCGGCCGTGTCTGCCGGATTGGGTACCTGTTGAAATCTCTCGTTATCTCGCGCACACGGTCTCTCA
GATTTCGATCCGCGAACTGGCGCGCAGCGCGGCGTGTCACCCGTCGACCGTTATGCGCCAGATCCACCGTGTCGAGCAAC
TGCGCGAAGATCCATTGATGGACGGCGCATTGCAGCGCTTGTCTGAACTCTGTGATGCGGATTCAGATCCATCTGGGGAA
ATTTCCCATTACAAAGAAGAAGATGCAGTGCGAAGTTTAACGCTTCTCTCATATGGTGGTGCGGTGCTTGCGGTTGGGCG
GGATATGCCCAAGGCGGTGATCCTGCGCGAGGTCGGGTCCGAGGTGCACAAAACCGTCATAGAGCGTAGCCTTGCCGAAA
TCCTTGCGCTGCGCGATTGGGTCAGCTGTTTTTCCTCTGGCCGCGTCTATCGCTATCGGCTCAGCAAGGACGGTCGTAGC
GCACTTGCCCAGCTGACAGCAAAGGCCGAGGCGTGTCACCGTTCACGCATGGAAACGACAACGCAATCGGGCCTTGCAGG
ACAGATTGCGGAGTTTTCACAGTCTGACGCTCTTAACGCAAAACGAGCGCGGTATGGCCAGCAGGACACACCGTTGCAAA
CCCTTGCGCGGTTGGTAGACCGTGATGGAAATTCTTTTCTGAGCAAAGAGATGGTACGCGCAGGTGAACGATTAAGAGAA
GATTTCGAACTCGCGCAGATTGGTCAGCATGTCGCCACGGAGCGCCGGGTTTTTGACGACAATCCGCGCGCGGCAGAGCA
TGCTACGGGTCCGACAAACGCCCTCAGCCGCGACGCCTTCCAGCGCGCCACAACCGCGCTGTGTGCACTCGGGCCGGGCT
TGAGCGATATTGCCCTGCGCTGCTGCTGTCATCTCGAGGGGCTCGAGGTGGCGGAACGCGAACTCGGCTGGTCCGCAAGG
TCGGGCAAGATCGTTCTCAGAATTGCGCTTCAGCAATTGCATCACCACTATGAATCTTTGCCGCCGCAAACCCAAATGAT
CGGATGA

Upstream 100 bases:

>100_bases
GAAGTTTTAACGTTCAGGAATGGGGAGAGATCAAGGTCATGATGCGTGTCATCCGGCCGGTGATCGGTGGCGTGGGCCTG
GGCAAAGCTAGGGGTCAGCT

Downstream 100 bases:

>100_bases
TTGCTGTTTCAAATGCGGATTTCATTCTGCCTTGGGTGGTAAAAGTTTCGGGCAAGTGTCCGCGCGCCTGAGTTCCAAGT
CCGTTGCAGAACCAAGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSELCDADSDPSGE
ISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRS
ALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE
DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSAR
SGKIVLRIALQQLHHHYESLPPQTQMIG

Sequences:

>Translated_348_residues
MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSELCDADSDPSGE
ISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRS
ALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE
DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSAR
SGKIVLRIALQQLHHHYESLPPQTQMIG
>Mature_348_residues
MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLMDGALQRLSELCDADSDPSGE
ISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGSEVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRS
ALAQLTAKAEACHRSRMETTTQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE
DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALRCCCHLEGLEVAERELGWSAR
SGKIVLRIALQQLHHHYESLPPQTQMIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38549; Mature: 38549

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH
DGALQRLSELCDADSDPSGEISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
EVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRSALAQLTAKAEACHRSRMETT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
TQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE
HHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALR
HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
CCCHLEGLEVAERELGWSARSGKIVLRIALQQLHHHYESLPPQTQMIG
HHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNGVTRPCLPDWVPVEISRYLAHTVSQISIRELARSAACHPSTVMRQIHRVEQLREDPLM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH
DGALQRLSELCDADSDPSGEISHYKEEDAVRSLTLLSYGGAVLAVGRDMPKAVILREVGS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
EVHKTVIERSLAEILALRDWVSCFSSGRVYRYRLSKDGRSALAQLTAKAEACHRSRMETT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
TQSGLAGQIAEFSQSDALNAKRARYGQQDTPLQTLARLVDRDGNSFLSKEMVRAGERLRE
HHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DFELAQIGQHVATERRVFDDNPRAAEHATGPTNALSRDAFQRATTALCALGPGLSDIALR
HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
CCCHLEGLEVAERELGWSARSGKIVLRIALQQLHHHYESLPPQTQMIG
HHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA