| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081193
Identifier: 99081193
GI number: 99081193
Start: 1442665
End: 1443237
Strand: Direct
Name: 99081193
Synonym: TM1040_1352
Alternate gene names: NA
Gene position: 1442665-1443237 (Clockwise)
Preceding gene: 99081192
Following gene: 99081195
Centisome position: 45.07
GC content: 60.73
Gene sequence:
>573_bases ATGAGCACATCCAAATCCCGTCTTTCCCGTCGTGCGTTTACCGCCAGCGGACTCGCGGCCATTGGGGCCACCGCAGCATG CAGCAACGGGATCGGCAACACCAATGACGTGAAAATCGACGCCCGCGTCAATGCCACCCTCAATCAGATGTATGACCGCT ATCCCGGCACCCGCGATCTGGCACAGAAATCTGCCGGTATGCTGGTGATGCCCCTCGTCACCGAGGCGGGCTTTATCTTT GGTGGCGCCTATGGGCGCGGCGCGCTGCGGATCAATGGCGCCACGGTTGACTATTATGCCGCCCTCAAGGGCAACGCCGG TCTGCAGCTGGGCGCGCAGCAATATTCCCATGTCTTGTTCTTTATGACCGACGCCGCGCTGGCGCGGTTCCGCCGCTCGT CGGGTTGGACGGCCGGTGCAGATCTTGAGTATGTGGTCATCGACGAAGGCGACGCACTGACGGCGGATACAAATACGCTG ACGGCGCCTGTGGTTGCTGCAGTCTTTGGTCAGGCCGGGATTCGGATCGGAGCCACCATCGAGGGCTCCAAATACACACG TATCATTCCCTGA
Upstream 100 bases:
>100_bases GCTCAATCGGGCAGGCTTCAAAGTGACAGCTTTAGGGATTATGCATATAGTTGTGTCAAACAAAGCGCCAAAGCGCAGAT TCACGAGCAGGTAACAGAAC
Downstream 100 bases:
>100_bases TTTTGTTTTATATCAAGGTGATGAAGACCTCCCCTCATTCGAGGGGAGGCTTTTTTTCAGCCCAAGGCCCGCAGCCGTTT GATCAGGGATGAGGTGTCCC
Product: twin-arginine translocation pathway signal sequence domain-containing protein
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MSTSKSRLSRRAFTASGLAAIGATAACSNGIGNTNDVKIDARVNATLNQMYDRYPGTRDLAQKSAGMLVMPLVTEAGFIF GGAYGRGALRINGATVDYYAALKGNAGLQLGAQQYSHVLFFMTDAALARFRRSSGWTAGADLEYVVIDEGDALTADTNTL TAPVVAAVFGQAGIRIGATIEGSKYTRIIP
Sequences:
>Translated_190_residues MSTSKSRLSRRAFTASGLAAIGATAACSNGIGNTNDVKIDARVNATLNQMYDRYPGTRDLAQKSAGMLVMPLVTEAGFIF GGAYGRGALRINGATVDYYAALKGNAGLQLGAQQYSHVLFFMTDAALARFRRSSGWTAGADLEYVVIDEGDALTADTNTL TAPVVAAVFGQAGIRIGATIEGSKYTRIIP >Mature_189_residues STSKSRLSRRAFTASGLAAIGATAACSNGIGNTNDVKIDARVNATLNQMYDRYPGTRDLAQKSAGMLVMPLVTEAGFIFG GAYGRGALRINGATVDYYAALKGNAGLQLGAQQYSHVLFFMTDAALARFRRSSGWTAGADLEYVVIDEGDALTADTNTLT APVVAAVFGQAGIRIGATIEGSKYTRIIP
Specific function: Unknown
COG id: COG2930
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19912; Mature: 19781
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSKSRLSRRAFTASGLAAIGATAACSNGIGNTNDVKIDARVNATLNQMYDRYPGTRDL CCCCHHHHHHHHHHHCCHHHHCCHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCHHHH AQKSAGMLVMPLVTEAGFIFGGAYGRGALRINGATVDYYAALKGNAGLQLGAQQYSHVLF HHHCCCEEEEEEHHHCCEEEECCCCCCEEEECCCEEEEEEEECCCCCEEECHHHHCEEEE FMTDAALARFRRSSGWTAGADLEYVVIDEGDALTADTNTLTAPVVAAVFGQAGIRIGATI EEHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHCCCCEEEEEEE EGSKYTRIIP CCCEEEEECC >Mature Secondary Structure STSKSRLSRRAFTASGLAAIGATAACSNGIGNTNDVKIDARVNATLNQMYDRYPGTRDL CCCHHHHHHHHHHHCCHHHHCCHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCHHHH AQKSAGMLVMPLVTEAGFIFGGAYGRGALRINGATVDYYAALKGNAGLQLGAQQYSHVLF HHHCCCEEEEEEHHHCCEEEECCCCCCEEEECCCEEEEEEEECCCCCEEECHHHHCEEEE FMTDAALARFRRSSGWTAGADLEYVVIDEGDALTADTNTLTAPVVAAVFGQAGIRIGATI EEHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHCCCCEEEEEEE EGSKYTRIIP CCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA