| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is quiP [H]
Identifier: 99081195
GI number: 99081195
Start: 1444280
End: 1446769
Strand: Direct
Name: quiP [H]
Synonym: TM1040_1354
Alternate gene names: 99081195
Gene position: 1444280-1446769 (Clockwise)
Preceding gene: 99081193
Following gene: 99081205
Centisome position: 45.12
GC content: 61.65
Gene sequence:
>2490_bases ATGGCACGCCTCTTCCGCTGGCTCCTCCGCCTCACGGCTGGTACGATTCTGCTTGGTATTCTGGGGGCGATCCTGGTCTA TTTCCTCGCGGCGCAGTCCTTGCCAGACTATGACAAGGAGATCGCCCTGCCCGGCCCTACGGCTCCGGTCGAGATCGTGC GCGACAACGCGAATGTGCCGCATATCTTTGGCAGCTTTGGTGCCTCGGATGAGGACGTGTTTTTTGGGCTCGGGTATGCT CATGCGCAGGATCGACTGTGGCAGATGGCCGTGATGCGACGCACGGCGCAGGGTCGGCTTTCCGAGGTCTTTGGCCCCCG TACCGTCCGCACAGACAGTTTTTTGCGGCGGCTTGATCTTTATGGGGCGGCGCGAAGTTCGGTTTCCGCCCAGAGCCCCG AAACGCTCCGGGCGCTGCAGGCCTATGCTGCGGGCGTGAATGCGCGCCTGCAAGAGATCAACGAAGACGCGCTGGGGCGT GGGGCACCGGAAATGTTCCTGTTCAACATGCCCATAGCGCCGTGGCAGCCCGCCGACAGCATCGCCATTATGAAACTGAT GGCCGTGCAGCTCTCATCCAATATGCAAGAAGAGATCCTGCGCGCGCAGACTTCCATTGCCCTCGATGATCCCAAACGCC TTGAGGATATCCTGCCCGATGCTCCCGGCTCTGGGACGGCGACGCTTCCGGAATATACGGAGCTGTTTCCCGGCCTCCCG GGATTTCGTGGTCTCGAGGAACAGCGCCGGGCGCAAACGGCGCATGCTGCGTTGATGCCCCTGGCGCCACGTGGGCTTGG TGGGGCTTCGAATGCCTGGGCTGCGGCGCCCAATCGTTCGGCGGCGGGTGGCACGCTTCTTGCCAATGACCCGCATCTGA AGCTGACAGCGCCCGGAACCTGGTATCTGGCACGTCTTGAGCTTGGCACCGGCGGTGTGATTGGTGGCACAATCCCGGGC ATCCCGGCTGTGCTCACCGGGCGTTCTCAGCAGTTGGGATGGGGGCTCACCTCTTCCTATCTGGATGATCAGGACCTCTT TATCGAGAAGATCAACCCGGACAACCCGCAGCAGTATCTGACCCCAAATGGCTACAAGGACTTCACATCGCGGCCTTCGA TCGTGCAGATAAAGGGCAATGCGCCGCTGACGCTGACCCTGCGCTGGACCGAAAACGGGCCGGTTCTGCCCGGCTCGCTG TTTGAGCTCAGCACCATTACGCCGCCCGGCCACGTTGTGAGCCTAGGGTGGACGGCATTGTCGCGCGAGGACACCTCGAT GACTGCGGCGCTCGATCTGATGCGGGCAGAAAATGTCGCGCAGGCCATTGCCGCAGGCGAGAACTTCATCGCGCCTTCCC AAAATATCACGCTGGCGGATCATGACACCATCGCGCTCAAGACCGTGGGCGTCATGCCCGACCGCGACCTGCGCAACCAA AGCCGGGGACGCCTGCCCAACCAGGGCTGGCGGCGCGAAAACCGCTGGCAAGGGCGCTTGCCCTATGCGGCGAACCCGGA GTTCATTGCGCCCAGCGGTGGGATTTTGGGAAATACAAACAACAAGTTGCTAGAGCGCCCCTTTCCCAACCACGTCAGTT ATTCCTGGGGCGACACACAGCGGATCAATCGCTGGCGCCGTCTGATGCAGAGCCGCGAGGTGCATACCCGCGACAGTTTC ATCGAAGCGCAGCTCGATACGGTTTCCTATAGCGCGCAAACCCTCCTGCCTCTTATCGGGGCGGATCTGTGGTTCACCGG TGAAGCTGCGCCCAATGGCACGCCGGAACGCCAGCGCCAGATCGCATTGTCGCTCTTGGCGGAGTGGAACGGCGAGATGA ACGAGCATTTGCCCGAGCCTCTGATCTACGCAAGTTGGGTGCGTGCTTTGCAAAAACGTCTGATCGAGGACGACCTAGGC CCCCTTGCGGATGCGTTTGACCGGGTTGAGCCGCTGTTCCTGGAACGGGTGTTCCGCAATATCGATGGCGCTGCAGCCTG GTGTGATGTCGCCCAGAGCGCCCCGACCGAGAGCTGCACCGACATGGCGCGCCTCGCGCTGGACGACGCGCTCGTCTACA TCAGCGAAAACTACGGCAGTACATTGGAAAGCCTGCGCTGGGGGGATGCGCATCAGGCCACCCAGGATCACGAGGTCTTG GGCGAGGTGCCGTTCCTGCGCTATTTCGTCAACATCCGTCAATCCACCAGTGGTGGAGACAATACGCTGCAGCGCGGCCT CACCTCGGGCGAGGAGCCGGCGCCCTTCAACAATGTGCATGGGGCGGGCTATCGCGGTGTCTATGATTTCGCCGATCCCG AAAGCTCTGTTTTCATTATAGCAACAGGCCAGTCCGGGCATTTCCTGTCGCGCTACTACGATGACATGGCACAGTACTGG CGGCGTGGGGAGTATATCCCGATGTCTCTCGACGAAAAACTGGCGCGCGCCGCTTCCGTCGGCGTCACCCGTATCCTGCC GCGCAACTAA
Upstream 100 bases:
>100_bases GTTCTGTCTTCGCATATGTTGGCGCCAACCCTAGCAGCACCCGCCCAAAGCGCAATGCGGCTTGGCAACAAACACAGAAA TACCAAGGGAATAGAAAAGA
Downstream 100 bases:
>100_bases AGAAAAACGCAGCGCTCTAGAGCGCTGCGTATTGTGCTTTTTGCTTTTCGGTCCAGCGCACGGAAATCTCAAACCCGGTG TCGGTCTGGTTTTCCTCTTG
Product: penicillin amidase
Products: NA
Alternate protein names: AHL acylase quiP; Acyl-HSL acylase quiP; Quorum signal utilization and inactivation protein; Acyl-HSL acylase quiP subunit alpha; Acyl-HSL acylase quiP subunit beta [H]
Number of amino acids: Translated: 829; Mature: 828
Protein sequence:
>829_residues MARLFRWLLRLTAGTILLGILGAILVYFLAAQSLPDYDKEIALPGPTAPVEIVRDNANVPHIFGSFGASDEDVFFGLGYA HAQDRLWQMAVMRRTAQGRLSEVFGPRTVRTDSFLRRLDLYGAARSSVSAQSPETLRALQAYAAGVNARLQEINEDALGR GAPEMFLFNMPIAPWQPADSIAIMKLMAVQLSSNMQEEILRAQTSIALDDPKRLEDILPDAPGSGTATLPEYTELFPGLP GFRGLEEQRRAQTAHAALMPLAPRGLGGASNAWAAAPNRSAAGGTLLANDPHLKLTAPGTWYLARLELGTGGVIGGTIPG IPAVLTGRSQQLGWGLTSSYLDDQDLFIEKINPDNPQQYLTPNGYKDFTSRPSIVQIKGNAPLTLTLRWTENGPVLPGSL FELSTITPPGHVVSLGWTALSREDTSMTAALDLMRAENVAQAIAAGENFIAPSQNITLADHDTIALKTVGVMPDRDLRNQ SRGRLPNQGWRRENRWQGRLPYAANPEFIAPSGGILGNTNNKLLERPFPNHVSYSWGDTQRINRWRRLMQSREVHTRDSF IEAQLDTVSYSAQTLLPLIGADLWFTGEAAPNGTPERQRQIALSLLAEWNGEMNEHLPEPLIYASWVRALQKRLIEDDLG PLADAFDRVEPLFLERVFRNIDGAAAWCDVAQSAPTESCTDMARLALDDALVYISENYGSTLESLRWGDAHQATQDHEVL GEVPFLRYFVNIRQSTSGGDNTLQRGLTSGEEPAPFNNVHGAGYRGVYDFADPESSVFIIATGQSGHFLSRYYDDMAQYW RRGEYIPMSLDEKLARAASVGVTRILPRN
Sequences:
>Translated_829_residues MARLFRWLLRLTAGTILLGILGAILVYFLAAQSLPDYDKEIALPGPTAPVEIVRDNANVPHIFGSFGASDEDVFFGLGYA HAQDRLWQMAVMRRTAQGRLSEVFGPRTVRTDSFLRRLDLYGAARSSVSAQSPETLRALQAYAAGVNARLQEINEDALGR GAPEMFLFNMPIAPWQPADSIAIMKLMAVQLSSNMQEEILRAQTSIALDDPKRLEDILPDAPGSGTATLPEYTELFPGLP GFRGLEEQRRAQTAHAALMPLAPRGLGGASNAWAAAPNRSAAGGTLLANDPHLKLTAPGTWYLARLELGTGGVIGGTIPG IPAVLTGRSQQLGWGLTSSYLDDQDLFIEKINPDNPQQYLTPNGYKDFTSRPSIVQIKGNAPLTLTLRWTENGPVLPGSL FELSTITPPGHVVSLGWTALSREDTSMTAALDLMRAENVAQAIAAGENFIAPSQNITLADHDTIALKTVGVMPDRDLRNQ SRGRLPNQGWRRENRWQGRLPYAANPEFIAPSGGILGNTNNKLLERPFPNHVSYSWGDTQRINRWRRLMQSREVHTRDSF IEAQLDTVSYSAQTLLPLIGADLWFTGEAAPNGTPERQRQIALSLLAEWNGEMNEHLPEPLIYASWVRALQKRLIEDDLG PLADAFDRVEPLFLERVFRNIDGAAAWCDVAQSAPTESCTDMARLALDDALVYISENYGSTLESLRWGDAHQATQDHEVL GEVPFLRYFVNIRQSTSGGDNTLQRGLTSGEEPAPFNNVHGAGYRGVYDFADPESSVFIIATGQSGHFLSRYYDDMAQYW RRGEYIPMSLDEKLARAASVGVTRILPRN >Mature_828_residues ARLFRWLLRLTAGTILLGILGAILVYFLAAQSLPDYDKEIALPGPTAPVEIVRDNANVPHIFGSFGASDEDVFFGLGYAH AQDRLWQMAVMRRTAQGRLSEVFGPRTVRTDSFLRRLDLYGAARSSVSAQSPETLRALQAYAAGVNARLQEINEDALGRG APEMFLFNMPIAPWQPADSIAIMKLMAVQLSSNMQEEILRAQTSIALDDPKRLEDILPDAPGSGTATLPEYTELFPGLPG FRGLEEQRRAQTAHAALMPLAPRGLGGASNAWAAAPNRSAAGGTLLANDPHLKLTAPGTWYLARLELGTGGVIGGTIPGI PAVLTGRSQQLGWGLTSSYLDDQDLFIEKINPDNPQQYLTPNGYKDFTSRPSIVQIKGNAPLTLTLRWTENGPVLPGSLF ELSTITPPGHVVSLGWTALSREDTSMTAALDLMRAENVAQAIAAGENFIAPSQNITLADHDTIALKTVGVMPDRDLRNQS RGRLPNQGWRRENRWQGRLPYAANPEFIAPSGGILGNTNNKLLERPFPNHVSYSWGDTQRINRWRRLMQSREVHTRDSFI EAQLDTVSYSAQTLLPLIGADLWFTGEAAPNGTPERQRQIALSLLAEWNGEMNEHLPEPLIYASWVRALQKRLIEDDLGP LADAFDRVEPLFLERVFRNIDGAAAWCDVAQSAPTESCTDMARLALDDALVYISENYGSTLESLRWGDAHQATQDHEVLG EVPFLRYFVNIRQSTSGGDNTLQRGLTSGEEPAPFNNVHGAGYRGVYDFADPESSVFIIATGQSGHFLSRYYDDMAQYWR RGEYIPMSLDEKLARAASVGVTRILPRN
Specific function: Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of seven or more carbons in lengt
COG id: COG2366
COG function: function code R; Protein related to penicillin acylase
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S45 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014395 - InterPro: IPR002692 [H]
Pfam domain/function: PF01804 Penicil_amidase [H]
EC number: =3.5.1.97 [H]
Molecular weight: Translated: 91185; Mature: 91054
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLFRWLLRLTAGTILLGILGAILVYFLAAQSLPDYDKEIALPGPTAPVEIVRDNANVP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC HIFGSFGASDEDVFFGLGYAHAQDRLWQMAVMRRTAQGRLSEVFGPRTVRTDSFLRRLDL EEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH YGAARSSVSAQSPETLRALQAYAAGVNARLQEINEDALGRGAPEMFLFNMPIAPWQPADS HHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCCCCH IAIMKLMAVQLSSNMQEEILRAQTSIALDDPKRLEDILPDAPGSGTATLPEYTELFPGLP HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC GFRGLEEQRRAQTAHAALMPLAPRGLGGASNAWAAAPNRSAAGGTLLANDPHLKLTAPGT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCC WYLARLELGTGGVIGGTIPGIPAVLTGRSQQLGWGLTSSYLDDQDLFIEKINPDNPQQYL EEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHCCCCHHEEEECCCCCCHHCC TPNGYKDFTSRPSIVQIKGNAPLTLTLRWTENGPVLPGSLFELSTITPPGHVVSLGWTAL CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCHHH SREDTSMTAALDLMRAENVAQAIAAGENFIAPSQNITLADHDTIALKTVGVMPDRDLRNQ CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEEECCCCCHHHHHH SRGRLPNQGWRRENRWQGRLPYAANPEFIAPSGGILGNTNNKLLERPFPNHVSYSWGDTQ HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCHHHCCCCCCCCCCCCCCHH RINRWRRLMQSREVHTRDSFIEAQLDTVSYSAQTLLPLIGADLWFTGEAAPNGTPERQRQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHH IALSLLAEWNGEMNEHLPEPLIYASWVRALQKRLIEDDLGPLADAFDRVEPLFLERVFRN HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC IDGAAAWCDVAQSAPTESCTDMARLALDDALVYISENYGSTLESLRWGDAHQATQDHEVL CCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCHHHHHCCCCHHCCCCHHHHH GEVPFLRYFVNIRQSTSGGDNTLQRGLTSGEEPAPFNNVHGAGYRGVYDFADPESSVFII HCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE ATGQSGHFLSRYYDDMAQYWRRGEYIPMSLDEKLARAASVGVTRILPRN EECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHCCCCCC >Mature Secondary Structure ARLFRWLLRLTAGTILLGILGAILVYFLAAQSLPDYDKEIALPGPTAPVEIVRDNANVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCC HIFGSFGASDEDVFFGLGYAHAQDRLWQMAVMRRTAQGRLSEVFGPRTVRTDSFLRRLDL EEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH YGAARSSVSAQSPETLRALQAYAAGVNARLQEINEDALGRGAPEMFLFNMPIAPWQPADS HHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCCCCH IAIMKLMAVQLSSNMQEEILRAQTSIALDDPKRLEDILPDAPGSGTATLPEYTELFPGLP HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC GFRGLEEQRRAQTAHAALMPLAPRGLGGASNAWAAAPNRSAAGGTLLANDPHLKLTAPGT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCC WYLARLELGTGGVIGGTIPGIPAVLTGRSQQLGWGLTSSYLDDQDLFIEKINPDNPQQYL EEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHCCCCHHEEEECCCCCCHHCC TPNGYKDFTSRPSIVQIKGNAPLTLTLRWTENGPVLPGSLFELSTITPPGHVVSLGWTAL CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCHHH SREDTSMTAALDLMRAENVAQAIAAGENFIAPSQNITLADHDTIALKTVGVMPDRDLRNQ CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEEECCCCCHHHHHH SRGRLPNQGWRRENRWQGRLPYAANPEFIAPSGGILGNTNNKLLERPFPNHVSYSWGDTQ HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCHHHCCCCCCCCCCCCCCHH RINRWRRLMQSREVHTRDSFIEAQLDTVSYSAQTLLPLIGADLWFTGEAAPNGTPERQRQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHH IALSLLAEWNGEMNEHLPEPLIYASWVRALQKRLIEDDLGPLADAFDRVEPLFLERVFRN HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC IDGAAAWCDVAQSAPTESCTDMARLALDDALVYISENYGSTLESLRWGDAHQATQDHEVL CCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCHHHHHCCCCHHCCCCHHHHH GEVPFLRYFVNIRQSTSGGDNTLQRGLTSGEEPAPFNNVHGAGYRGVYDFADPESSVFII HCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE ATGQSGHFLSRYYDDMAQYWRRGEYIPMSLDEKLARAASVGVTRILPRN EECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]