| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is ywbO [H]
Identifier: 99081188
GI number: 99081188
Start: 1435162
End: 1435863
Strand: Direct
Name: ywbO [H]
Synonym: TM1040_1347
Alternate gene names: 99081188
Gene position: 1435162-1435863 (Clockwise)
Preceding gene: 99081187
Following gene: 99081189
Centisome position: 44.84
GC content: 57.26
Gene sequence:
>702_bases ATGACTGAACCGCTTGCGCAAGTGAAACTCGATATTCTGTCGGATCCGATCTGCCCCTGGTGCTATATCGGCAAGACCCA TCTGGACCGCGCTCTGGCAGAGGCGCCGGATCATCCTTTTGTGATCGAGTGGCACCCGTTCCAGCTCAATCCTGATATGC CAGGCGATGGCATGGACCGCCGCACCTATCTGGAAACGAAATTTGGTGGCAAAGACAACGCGGTAAAGGTCTATGCTCAG ATCGCGGAGCATGCGCAGGCCGCGGGTGTCGAGATCAACTTCGAAGCCATGCAGCGCACCCCGAACACGATCAACGCGCA TCGTCTGATCCATTGGGCCGGATTGGAAGCCAAACAATCCGACGTCGTCGACGCTCTGTTCAAAGCCTATTTCGTCGAGG GCAAGGATATTGGCGATCCCGTGGTGCTCGCCGATCTGGCCGAACAAGCAGGCATGGAGCGCGCCGTAGTTGAGCGTCTT CTGAGTGGTGATAGCGATGCAGAGGACATCCGCGCACGCGACGCGCATTCGCGCAAGATGGGTGTCAATTCGGTCCCGAC ATTTGTGATTGCCAATCAACATGTGGTGCCGGGTGCGCAACAGCCCGAGCTCTGGGCGCAGGTCATAGCGGATATTCGCG CTCAACTTGAACAATCGGCCGCCGCATCAGACTCGCCTGAAGAAGGTGATGCAGTGCATTAA
Upstream 100 bases:
>100_bases CAAACGCCCAAAGACTTACAAGCGCCTGGCGGAGTTTCCAACCAACCCGAATGGAAAACTCTTGCGCCGCGCCCTGCCCG ATCTGTTTAAGGACTGACCC
Downstream 100 bases:
>100_bases TAACGCGCGTGTTTTGCGGATCTGGCTCGCCCAGGCCGCCGGACATCGCTCCAGAGCGCACAGGGATCTGTGCGCTCATT TAACACTTGAAGCACTTCCC
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 232
Protein sequence:
>233_residues MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGGKDNAVKVYAQ IAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERL LSGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH
Sequences:
>Translated_233_residues MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGGKDNAVKVYAQ IAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERL LSGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH >Mature_232_residues TEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGGKDNAVKVYAQI AEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERLL SGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH
Specific function: Unknown
COG id: COG2761
COG function: function code Q; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 25596; Mature: 25465
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDR CCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCCCC RTYLETKFGGKDNAVKVYAQIAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQS CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCHHHEEEECCCCCHHH DVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERLLSGDSDAEDIRARDAHSRKM HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC GVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH CCCCCCEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDR CCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCCCC RTYLETKFGGKDNAVKVYAQIAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQS CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCHHHEEEECCCCCHHH DVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERLLSGDSDAEDIRARDAHSRKM HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC GVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH CCCCCCEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377 [H]