Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is ywbO [H]

Identifier: 99081188

GI number: 99081188

Start: 1435162

End: 1435863

Strand: Direct

Name: ywbO [H]

Synonym: TM1040_1347

Alternate gene names: 99081188

Gene position: 1435162-1435863 (Clockwise)

Preceding gene: 99081187

Following gene: 99081189

Centisome position: 44.84

GC content: 57.26

Gene sequence:

>702_bases
ATGACTGAACCGCTTGCGCAAGTGAAACTCGATATTCTGTCGGATCCGATCTGCCCCTGGTGCTATATCGGCAAGACCCA
TCTGGACCGCGCTCTGGCAGAGGCGCCGGATCATCCTTTTGTGATCGAGTGGCACCCGTTCCAGCTCAATCCTGATATGC
CAGGCGATGGCATGGACCGCCGCACCTATCTGGAAACGAAATTTGGTGGCAAAGACAACGCGGTAAAGGTCTATGCTCAG
ATCGCGGAGCATGCGCAGGCCGCGGGTGTCGAGATCAACTTCGAAGCCATGCAGCGCACCCCGAACACGATCAACGCGCA
TCGTCTGATCCATTGGGCCGGATTGGAAGCCAAACAATCCGACGTCGTCGACGCTCTGTTCAAAGCCTATTTCGTCGAGG
GCAAGGATATTGGCGATCCCGTGGTGCTCGCCGATCTGGCCGAACAAGCAGGCATGGAGCGCGCCGTAGTTGAGCGTCTT
CTGAGTGGTGATAGCGATGCAGAGGACATCCGCGCACGCGACGCGCATTCGCGCAAGATGGGTGTCAATTCGGTCCCGAC
ATTTGTGATTGCCAATCAACATGTGGTGCCGGGTGCGCAACAGCCCGAGCTCTGGGCGCAGGTCATAGCGGATATTCGCG
CTCAACTTGAACAATCGGCCGCCGCATCAGACTCGCCTGAAGAAGGTGATGCAGTGCATTAA

Upstream 100 bases:

>100_bases
CAAACGCCCAAAGACTTACAAGCGCCTGGCGGAGTTTCCAACCAACCCGAATGGAAAACTCTTGCGCCGCGCCCTGCCCG
ATCTGTTTAAGGACTGACCC

Downstream 100 bases:

>100_bases
TAACGCGCGTGTTTTGCGGATCTGGCTCGCCCAGGCCGCCGGACATCGCTCCAGAGCGCACAGGGATCTGTGCGCTCATT
TAACACTTGAAGCACTTCCC

Product: DSBA oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGGKDNAVKVYAQ
IAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERL
LSGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH

Sequences:

>Translated_233_residues
MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGGKDNAVKVYAQ
IAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERL
LSGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH
>Mature_232_residues
TEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDRRTYLETKFGGKDNAVKVYAQI
AEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQSDVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERLL
SGDSDAEDIRARDAHSRKMGVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH

Specific function: Unknown

COG id: COG2761

COG function: function code Q; Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001853
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF01323 DSBA [H]

EC number: NA

Molecular weight: Translated: 25596; Mature: 25465

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDR
CCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCCCC
RTYLETKFGGKDNAVKVYAQIAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQS
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCHHHEEEECCCCCHHH
DVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERLLSGDSDAEDIRARDAHSRKM
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
GVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH
CCCCCCEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TEPLAQVKLDILSDPICPWCYIGKTHLDRALAEAPDHPFVIEWHPFQLNPDMPGDGMDR
CCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECEEECCCCCCCCCCC
RTYLETKFGGKDNAVKVYAQIAEHAQAAGVEINFEAMQRTPNTINAHRLIHWAGLEAKQS
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCHHHEEEECCCCCHHH
DVVDALFKAYFVEGKDIGDPVVLADLAEQAGMERAVVERLLSGDSDAEDIRARDAHSRKM
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
GVNSVPTFVIANQHVVPGAQQPELWAQVIADIRAQLEQSAAASDSPEEGDAVH
CCCCCCEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]