| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bclA [H]
Identifier: 99081187
GI number: 99081187
Start: 1433650
End: 1435158
Strand: Direct
Name: bclA [H]
Synonym: TM1040_1346
Alternate gene names: 99081187
Gene position: 1433650-1435158 (Clockwise)
Preceding gene: 99081185
Following gene: 99081188
Centisome position: 44.79
GC content: 60.3
Gene sequence:
>1509_bases ATGCTTTCCATTTTTGACACCGGCGCACCGCCTGCCTGCCCCCCAGCTTTCAATCTTGCGGCGCATGTCTTGCGCCACGC CGCGAACCGTGCCGGTCACCCCGCCCTGGTGATTGCAGGACCGGAGCAGGATCAGATCTGGACCTATGCTGCCTTTGAAC GCGCGGTGCGGGGAACCGCACGGGGCTTTCTCGAATCCGGATTTGAGCCCGGCGATATCCTCTTGATGCGATTGGGAAAT ACCGTCGAATTCCCGATTACGTTTCTCGCCGCGATCCTGGTCGGTATTGTGCCAGTGCCGACATCTTCGCAGCTGACCAA ACGCGAGGTCGCGCGGATGGTGGAGGATCTATCCCCCGCAGGGATCGTCAGCGCGCCTGACATCGCCACCCATCCGCACT CGCGCGCGGTCTCTCTTGATAGGCTGCGCGCCATGCAGTCCTGCCCACCAGCCGACGCCGTGCTCGGTGATCCGGATCGG CTCGCCTATATCGTCTATACCTCTGGCACTGGCGGATCTCCGCGCGCGGTGCAACATGCCCATCGGGCTATCTGGGCCCG GCAGATGATGATCCGCGACTGGTATGACCTGAGCCGAAATGATCGCCTGCTGCATGCAGGAGCCTTCAACTGGACCTTTA CCCTTGGCACCGGGATCATGGATCCGCTGTCCGTCGGTGCAACCGCCATCATTCCATCTGCCGACACGGATCTTTTGGAC CTGCCGCGGGTATTGACGCGCACTCAGGCGACGATCTTTGCCGCCGTACCAGGTGTTTATAGAAAGATTCTGAAGTGCGA CACCCTGCCCGTTCTGCCTGACCTCAGACATGGGCTTGCAGCGGGTGAGGCTCTGAGTGGCGATATCCGCGACGGCTGGA AAGATCGAATTGGCACCCCGATCTTTGAGGCCTTTGGCATGTCTGAATGCTCCACCTTTATCTCCTCGGCCCCGCATCGC CCTTCTGTCGCACAGAGCATGGGCGCGCCACAACGCGGCCGCAGAATTGCGATCATCGGCGAGGATGGCCCTGCTCCAAT CGGCGAAGAAGGGATCATCGCGGTTCACCGATCTGATCCCGGTTTGATGCTCGGCTACCTCAATGCCCCCGAGGAGACTC GCGCGCGCTTTGACGGTGAGTGGTTTTTGACCGGGGATCGTGGCATCATGCGGGCGGATGGCCAGATCATCTATTGCGGG CGCAACGACGATATGATGAATGCAGGGGGCTTTCGCGTCTCCCCGCTCGAGATCGAAACAGTGTTTGCGACCCATCCCGG TCTGTCTCAATTTGCGGCGGCTGAGGTGGAGGTGAAACCCGGCGTCCACATCATCGTGGGCGTTTTCAAGGGTCGCGAGG ATGTGACCGAAATGGCGCTACAGGCTTTTGCACAAGAGCGTCTGGCCGCGTACAAACGCCCAAAGACTTACAAGCGCCTG GCGGAGTTTCCAACCAACCCGAATGGAAAACTCTTGCGCCGCGCCCTGCCCGATCTGTTTAAGGACTGA
Upstream 100 bases:
>100_bases TCTTCGGGTCGCGTTCCTGCATAGCAACCCTATAAGTCTGCACGCAGGGCCTTGCAACGCCGACTTGCTCGAATGCGCAC CTCAGGATAGGCATTTCACC
Downstream 100 bases:
>100_bases CCCATGACTGAACCGCTTGCGCAAGTGAAACTCGATATTCTGTCGGATCCGATCTGCCCCTGGTGCTATATCGGCAAGAC CCATCTGGACCGCGCTCTGG
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Benzoyl-CoA synthetase [H]
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MLSIFDTGAPPACPPAFNLAAHVLRHAANRAGHPALVIAGPEQDQIWTYAAFERAVRGTARGFLESGFEPGDILLMRLGN TVEFPITFLAAILVGIVPVPTSSQLTKREVARMVEDLSPAGIVSAPDIATHPHSRAVSLDRLRAMQSCPPADAVLGDPDR LAYIVYTSGTGGSPRAVQHAHRAIWARQMMIRDWYDLSRNDRLLHAGAFNWTFTLGTGIMDPLSVGATAIIPSADTDLLD LPRVLTRTQATIFAAVPGVYRKILKCDTLPVLPDLRHGLAAGEALSGDIRDGWKDRIGTPIFEAFGMSECSTFISSAPHR PSVAQSMGAPQRGRRIAIIGEDGPAPIGEEGIIAVHRSDPGLMLGYLNAPEETRARFDGEWFLTGDRGIMRADGQIIYCG RNDDMMNAGGFRVSPLEIETVFATHPGLSQFAAAEVEVKPGVHIIVGVFKGREDVTEMALQAFAQERLAAYKRPKTYKRL AEFPTNPNGKLLRRALPDLFKD
Sequences:
>Translated_502_residues MLSIFDTGAPPACPPAFNLAAHVLRHAANRAGHPALVIAGPEQDQIWTYAAFERAVRGTARGFLESGFEPGDILLMRLGN TVEFPITFLAAILVGIVPVPTSSQLTKREVARMVEDLSPAGIVSAPDIATHPHSRAVSLDRLRAMQSCPPADAVLGDPDR LAYIVYTSGTGGSPRAVQHAHRAIWARQMMIRDWYDLSRNDRLLHAGAFNWTFTLGTGIMDPLSVGATAIIPSADTDLLD LPRVLTRTQATIFAAVPGVYRKILKCDTLPVLPDLRHGLAAGEALSGDIRDGWKDRIGTPIFEAFGMSECSTFISSAPHR PSVAQSMGAPQRGRRIAIIGEDGPAPIGEEGIIAVHRSDPGLMLGYLNAPEETRARFDGEWFLTGDRGIMRADGQIIYCG RNDDMMNAGGFRVSPLEIETVFATHPGLSQFAAAEVEVKPGVHIIVGVFKGREDVTEMALQAFAQERLAAYKRPKTYKRL AEFPTNPNGKLLRRALPDLFKD >Mature_502_residues MLSIFDTGAPPACPPAFNLAAHVLRHAANRAGHPALVIAGPEQDQIWTYAAFERAVRGTARGFLESGFEPGDILLMRLGN TVEFPITFLAAILVGIVPVPTSSQLTKREVARMVEDLSPAGIVSAPDIATHPHSRAVSLDRLRAMQSCPPADAVLGDPDR LAYIVYTSGTGGSPRAVQHAHRAIWARQMMIRDWYDLSRNDRLLHAGAFNWTFTLGTGIMDPLSVGATAIIPSADTDLLD LPRVLTRTQATIFAAVPGVYRKILKCDTLPVLPDLRHGLAAGEALSGDIRDGWKDRIGTPIFEAFGMSECSTFISSAPHR PSVAQSMGAPQRGRRIAIIGEDGPAPIGEEGIIAVHRSDPGLMLGYLNAPEETRARFDGEWFLTGDRGIMRADGQIIYCG RNDDMMNAGGFRVSPLEIETVFATHPGLSQFAAAEVEVKPGVHIIVGVFKGREDVTEMALQAFAQERLAAYKRPKTYKRL AEFPTNPNGKLLRRALPDLFKD
Specific function: Catalyzes the ligation of benzoate and CoA to form benzoyl-CoA at the expense of ATP. The enzyme also ligates 2- aminobenzoate and CoA. The enzyme shows activity toward a number of benzoate derivates [H]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. Benzoate-CoA ligase subfamily [H]
Homologues:
Organism=Homo sapiens, GI38505220, Length=535, Percent_Identity=25.0467289719626, Blast_Score=156, Evalue=5e-38, Organism=Homo sapiens, GI42544132, Length=527, Percent_Identity=23.5294117647059, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI122937307, Length=528, Percent_Identity=26.1363636363636, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI115511026, Length=553, Percent_Identity=25.6781193490054, Blast_Score=149, Evalue=6e-36, Organism=Homo sapiens, GI58082049, Length=533, Percent_Identity=24.390243902439, Blast_Score=146, Evalue=5e-35, Organism=Homo sapiens, GI157311624, Length=533, Percent_Identity=24.390243902439, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI157311622, Length=533, Percent_Identity=24.390243902439, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI187761345, Length=384, Percent_Identity=27.0833333333333, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI187761343, Length=384, Percent_Identity=27.0833333333333, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI195947378, Length=435, Percent_Identity=27.3563218390805, Blast_Score=109, Evalue=8e-24, Organism=Homo sapiens, GI42544134, Length=337, Percent_Identity=22.2551928783383, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI156151445, Length=524, Percent_Identity=22.9007633587786, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI1788107, Length=534, Percent_Identity=23.7827715355805, Blast_Score=126, Evalue=3e-30, Organism=Escherichia coli, GI145693145, Length=504, Percent_Identity=22.8174603174603, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786801, Length=517, Percent_Identity=24.3713733075435, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1786810, Length=504, Percent_Identity=22.4206349206349, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1789201, Length=359, Percent_Identity=23.9554317548747, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI221142682, Length=500, Percent_Identity=22.4, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1790505, Length=544, Percent_Identity=20.7720588235294, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1786529, Length=526, Percent_Identity=21.6730038022814, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1788595, Length=451, Percent_Identity=24.1685144124169, Blast_Score=67, Evalue=4e-12, Organism=Caenorhabditis elegans, GI32563687, Length=484, Percent_Identity=25.8264462809917, Blast_Score=120, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17558820, Length=498, Percent_Identity=25.5020080321285, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17557194, Length=496, Percent_Identity=22.5806451612903, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538037, Length=516, Percent_Identity=22.2868217054264, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17559526, Length=440, Percent_Identity=24.5454545454545, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17531443, Length=524, Percent_Identity=22.3282442748092, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560308, Length=521, Percent_Identity=22.4568138195777, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71994703, Length=360, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71994694, Length=360, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71994690, Length=360, Percent_Identity=22.2222222222222, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=369, Percent_Identity=22.7642276422764, Blast_Score=103, Evalue=5e-23, Organism=Drosophila melanogaster, GI18859661, Length=506, Percent_Identity=23.3201581027668, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24581924, Length=546, Percent_Identity=21.0622710622711, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI24667959, Length=368, Percent_Identity=25, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI62472339, Length=364, Percent_Identity=25, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24667955, Length=384, Percent_Identity=25, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281365686, Length=347, Percent_Identity=24.7838616714697, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI21356947, Length=364, Percent_Identity=25, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI21355181, Length=484, Percent_Identity=22.1074380165289, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000873 - InterPro: IPR011957 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.25 [H]
Molecular weight: Translated: 54438; Mature: 54438
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSIFDTGAPPACPPAFNLAAHVLRHAANRAGHPALVIAGPEQDQIWTYAAFERAVRGTA CCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHHH RGFLESGFEPGDILLMRLGNTVEFPITFLAAILVGIVPVPTSSQLTKREVARMVEDLSPA HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC GIVSAPDIATHPHSRAVSLDRLRAMQSCPPADAVLGDPDRLAYIVYTSGTGGSPRAVQHA CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH HRAIWARQMMIRDWYDLSRNDRLLHAGAFNWTFTLGTGIMDPLSVGATAIIPSADTDLLD HHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCHHHCCCEEEECCCCCCHHH LPRVLTRTQATIFAAVPGVYRKILKCDTLPVLPDLRHGLAAGEALSGDIRDGWKDRIGTP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHCHHHHCCCH IFEAFGMSECSTFISSAPHRPSVAQSMGAPQRGRRIAIIGEDGPAPIGEEGIIAVHRSDP HHHHHCHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCC GLMLGYLNAPEETRARFDGEWFLTGDRGIMRADGQIIYCGRNDDMMNAGGFRVSPLEIET CEEEEECCCCHHHHHCCCCCEEEECCCCEEEECCEEEEECCCCCCCCCCCEEECCEEEEE VFATHPGLSQFAAAEVEVKPGVHIIVGVFKGREDVTEMALQAFAQERLAAYKRPKTYKRL EEECCCCHHHHHHEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AEFPTNPNGKLLRRALPDLFKD HHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MLSIFDTGAPPACPPAFNLAAHVLRHAANRAGHPALVIAGPEQDQIWTYAAFERAVRGTA CCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHHH RGFLESGFEPGDILLMRLGNTVEFPITFLAAILVGIVPVPTSSQLTKREVARMVEDLSPA HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC GIVSAPDIATHPHSRAVSLDRLRAMQSCPPADAVLGDPDRLAYIVYTSGTGGSPRAVQHA CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH HRAIWARQMMIRDWYDLSRNDRLLHAGAFNWTFTLGTGIMDPLSVGATAIIPSADTDLLD HHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCHHHCCCEEEECCCCCCHHH LPRVLTRTQATIFAAVPGVYRKILKCDTLPVLPDLRHGLAAGEALSGDIRDGWKDRIGTP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHCHHHHCCCH IFEAFGMSECSTFISSAPHRPSVAQSMGAPQRGRRIAIIGEDGPAPIGEEGIIAVHRSDP HHHHHCHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCC GLMLGYLNAPEETRARFDGEWFLTGDRGIMRADGQIIYCGRNDDMMNAGGFRVSPLEIET CEEEEECCCCHHHHHCCCCCEEEECCCCEEEECCEEEEECCCCCCCCCCCEEECCEEEEE VFATHPGLSQFAAAEVEVKPGVHIIVGVFKGREDVTEMALQAFAQERLAAYKRPKTYKRL EEECCCCHHHHHHEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AEFPTNPNGKLLRRALPDLFKD HHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12897012 [H]