Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99081175

Identifier: 99081175

GI number: 99081175

Start: 1421393

End: 1422862

Strand: Reverse

Name: 99081175

Synonym: TM1040_1334

Alternate gene names: NA

Gene position: 1422862-1421393 (Counterclockwise)

Preceding gene: 99081176

Following gene: 99081172

Centisome position: 44.45

GC content: 59.12

Gene sequence:

>1470_bases
ATGAGCTCTTTTGAAGAACTGATTGCTTTTGAACGCCAAACGCAGGCTCTGGGTCAAATCGCAGGTCGGTTGGGCTGGGA
TCAGGAGACCATGATGCCTCGCGGCGCGGCCCCCCAGCGCGGTGAGGAGATGGCGGCAATCGAAGCCGTGCTGCACGCGC
GTCGCTCTGATCCTCGGGTCGCAGAGTGGCTCGACACTGCGCAGGCCCCGGATGAGACCGGCGCGGCACAATTGCGCGAA
ATTCGCCGCGCCTACGAGCGGGCGGTCAAGGTCCCCGGTGATCTGGCCAGTCAGATCGCGCGAGTCACATCCGAGGCACA
AGGCAAGTGGGCGCAGGCCCGCGCCGATGAAGATGTCGCGGCATTCCTGCCGGTCCTCAGCGAAGTAGTCGCACTGAAGC
GGCAGGAAGGTCAGGCATTGGCGGCGGGTGGAAACCTCTACGACGCAATGGTTGCAGATTACGAGCAGGGCACAACCTCT
TCGGAAATTGCGGAAATTTTTGATGCGATGCGTCCGGGCCTGGTCGATCTACGTGCGCGCGTGCTGGAAAAACCGACCCC
GGCGGGGCTGTCTGGCACCTTTGACGAGAACACCCAGATGAAGCTCGCGCGCAAGGTCGCCAAGACCTTTGGCTATGATA
TGAGCCACGGTCGCGTCGACAAAGCGGTCCATCCTTTCAGTTCGGGTAGCGGTCTGGATGTGCGCATTACAACGCGAACC
AACCCGCTAGATCCGTTCAACTGCATCTACTCAACCATTCACGAAGTCGGCCACGGCGCCTATGAGCAGAATATAGACCG
GGTTCATCTGCTGACTTCGCTTGGCCGCGGCGTCTCCATGGGGGTGCATGAAAGCCAGAGCCGGATCTATGAAAATCAGA
TCGGTCGCAGCCGCGCCTTCACCGGATGGCTCTTCAAGGAAATGACCGAAGCCTTTGGGGATGTTGGCGTTTCTTCTCCG
GAGGAGTTCTACAAAGCGGTAAACCGCGTGGAGAATGGCTACATCCGGACAGAGGCGGATGAGCTGCAGTACAACCTGCA
CATCATGCTCCGATTCGACCTGGAACGCGCCTTGATGCTGGGCGATCTGGAGGTTCAGGACCTCGAGAGCGCCTGGAATG
ATCGCTTCCTTGCCGATTTTGGCTATGCGGTGGACAAGCCCTCAAACGGATGCCTCCAGGACGTTCACTGGTCCGTTGGG
CTCTTTGGGTATTTCCCGACTTACTCGCTTGGCAACGTCTACGCTGGCTGCCTACATGAGGCGCTGCGCCGCGACATCGC
GGATCTGGATGCACAACTGTCTGAAGGAAACACCTCTGGTGCGACCGAATGGTTGCGGGAAAACCTGCAGCAATTCGGCG
GGCTGCGAGAGCCGCAAGAGACCATTGCCCATGCTGCAGGCTCTGCGCCGACCCACGCCCCATTGATGCACTACCTCGAA
GCAAAATTCTCAGAGATCTATGATCTTTGA

Upstream 100 bases:

>100_bases
GTTCACCAAGCCGTCGCCGTGCTGGTTTGGGTGCTGATCTTGCGCGCGCGCTTCCTCTCTGCCTATCCTGTCGCAACTTC
CATCAAAGGACATTGAAGAC

Downstream 100 bases:

>100_bases
CACAGGTGACGTCGGAGAAAGATCAAAGCCCGGGCAATATGTCCCGGGCTTTTTTTAGATCAACGCCATCCGCTCCGCGC
GTTCGGGATCGGGGAAAGGT

Product: carboxypeptidase

Products: NA

Alternate protein names: Carboxypeptidase Taq [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MSSFEELIAFERQTQALGQIAGRLGWDQETMMPRGAAPQRGEEMAAIEAVLHARRSDPRVAEWLDTAQAPDETGAAQLRE
IRRAYERAVKVPGDLASQIARVTSEAQGKWAQARADEDVAAFLPVLSEVVALKRQEGQALAAGGNLYDAMVADYEQGTTS
SEIAEIFDAMRPGLVDLRARVLEKPTPAGLSGTFDENTQMKLARKVAKTFGYDMSHGRVDKAVHPFSSGSGLDVRITTRT
NPLDPFNCIYSTIHEVGHGAYEQNIDRVHLLTSLGRGVSMGVHESQSRIYENQIGRSRAFTGWLFKEMTEAFGDVGVSSP
EEFYKAVNRVENGYIRTEADELQYNLHIMLRFDLERALMLGDLEVQDLESAWNDRFLADFGYAVDKPSNGCLQDVHWSVG
LFGYFPTYSLGNVYAGCLHEALRRDIADLDAQLSEGNTSGATEWLRENLQQFGGLREPQETIAHAAGSAPTHAPLMHYLE
AKFSEIYDL

Sequences:

>Translated_489_residues
MSSFEELIAFERQTQALGQIAGRLGWDQETMMPRGAAPQRGEEMAAIEAVLHARRSDPRVAEWLDTAQAPDETGAAQLRE
IRRAYERAVKVPGDLASQIARVTSEAQGKWAQARADEDVAAFLPVLSEVVALKRQEGQALAAGGNLYDAMVADYEQGTTS
SEIAEIFDAMRPGLVDLRARVLEKPTPAGLSGTFDENTQMKLARKVAKTFGYDMSHGRVDKAVHPFSSGSGLDVRITTRT
NPLDPFNCIYSTIHEVGHGAYEQNIDRVHLLTSLGRGVSMGVHESQSRIYENQIGRSRAFTGWLFKEMTEAFGDVGVSSP
EEFYKAVNRVENGYIRTEADELQYNLHIMLRFDLERALMLGDLEVQDLESAWNDRFLADFGYAVDKPSNGCLQDVHWSVG
LFGYFPTYSLGNVYAGCLHEALRRDIADLDAQLSEGNTSGATEWLRENLQQFGGLREPQETIAHAAGSAPTHAPLMHYLE
AKFSEIYDL
>Mature_488_residues
SSFEELIAFERQTQALGQIAGRLGWDQETMMPRGAAPQRGEEMAAIEAVLHARRSDPRVAEWLDTAQAPDETGAAQLREI
RRAYERAVKVPGDLASQIARVTSEAQGKWAQARADEDVAAFLPVLSEVVALKRQEGQALAAGGNLYDAMVADYEQGTTSS
EIAEIFDAMRPGLVDLRARVLEKPTPAGLSGTFDENTQMKLARKVAKTFGYDMSHGRVDKAVHPFSSGSGLDVRITTRTN
PLDPFNCIYSTIHEVGHGAYEQNIDRVHLLTSLGRGVSMGVHESQSRIYENQIGRSRAFTGWLFKEMTEAFGDVGVSSPE
EFYKAVNRVENGYIRTEADELQYNLHIMLRFDLERALMLGDLEVQDLESAWNDRFLADFGYAVDKPSNGCLQDVHWSVGL
FGYFPTYSLGNVYAGCLHEALRRDIADLDAQLSEGNTSGATEWLRENLQQFGGLREPQETIAHAAGSAPTHAPLMHYLEA
KFSEIYDL

Specific function: Releases amino acids sequentially from the C-terminus with a broad substrate specificity (except for proline) [H]

COG id: COG2317

COG function: function code E; Zn-dependent carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M32 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001333 [H]

Pfam domain/function: PF02074 Peptidase_M32 [H]

EC number: =3.4.17.19 [H]

Molecular weight: Translated: 54174; Mature: 54043

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFEELIAFERQTQALGQIAGRLGWDQETMMPRGAAPQRGEEMAAIEAVLHARRSDPRV
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
AEWLDTAQAPDETGAAQLREIRRAYERAVKVPGDLASQIARVTSEAQGKWAQARADEDVA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHH
AFLPVLSEVVALKRQEGQALAAGGNLYDAMVADYEQGTTSSEIAEIFDAMRPGLVDLRAR
HHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
VLEKPTPAGLSGTFDENTQMKLARKVAKTFGYDMSHGRVDKAVHPFSSGSGLDVRITTRT
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEEECC
NPLDPFNCIYSTIHEVGHGAYEQNIDRVHLLTSLGRGVSMGVHESQSRIYENQIGRSRAF
CCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHH
TGWLFKEMTEAFGDVGVSSPEEFYKAVNRVENGYIRTEADELQYNLHIMLRFDLERALML
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCHHHHEEEEEEEEEECHHHHHHH
GDLEVQDLESAWNDRFLADFGYAVDKPSNGCLQDVHWSVGLFGYFPTYSLGNVYAGCLHE
CCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALRRDIADLDAQLSEGNTSGATEWLRENLQQFGGLREPQETIAHAAGSAPTHAPLMHYLE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHH
AKFSEIYDL
HHHHHHHCC
>Mature Secondary Structure 
SSFEELIAFERQTQALGQIAGRLGWDQETMMPRGAAPQRGEEMAAIEAVLHARRSDPRV
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
AEWLDTAQAPDETGAAQLREIRRAYERAVKVPGDLASQIARVTSEAQGKWAQARADEDVA
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHH
AFLPVLSEVVALKRQEGQALAAGGNLYDAMVADYEQGTTSSEIAEIFDAMRPGLVDLRAR
HHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
VLEKPTPAGLSGTFDENTQMKLARKVAKTFGYDMSHGRVDKAVHPFSSGSGLDVRITTRT
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEEECC
NPLDPFNCIYSTIHEVGHGAYEQNIDRVHLLTSLGRGVSMGVHESQSRIYENQIGRSRAF
CCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHH
TGWLFKEMTEAFGDVGVSSPEEFYKAVNRVENGYIRTEADELQYNLHIMLRFDLERALML
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCHHHHEEEEEEEEEECHHHHHHH
GDLEVQDLESAWNDRFLADFGYAVDKPSNGCLQDVHWSVGLFGYFPTYSLGNVYAGCLHE
CCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ALRRDIADLDAQLSEGNTSGATEWLRENLQQFGGLREPQETIAHAAGSAPTHAPLMHYLE
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHH
AKFSEIYDL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7765282; 1369078 [H]