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The map label for this gene is glxA [H]

Identifier: 99081111

GI number: 99081111

Start: 1368432

End: 1369436

Strand: Direct

Name: glxA [H]

Synonym: TM1040_1270

Alternate gene names: 99081111

Gene position: 1368432-1369436 (Clockwise)

Preceding gene: 99081109

Following gene: 99081113

Centisome position: 42.75

GC content: 57.81

Gene sequence:

>1005_bases
ATGCAAACCAAGCCAGAGGCGATTCCCGAGCTCACGTCGGGCGGTAAACATCGTCGGTTTACGTTTGTCCTGTTGGATCA
ATTCACCCTCCTGTGCTTCTCCGCCGCGATGGAATCGCTGCGGATCGCCAATCGCATGGCAGGTCGCGACCTCTATTCCT
GGACCCTTGTTGGCGAAGGTGGCGAGACTGTTACCTGCTCTGCCGGGACCGTGTTTCAGGTGGATTCTGACCTCACAGAG
TTACAACGTGATGACACCATTATGCTCTGCGGTGGGATTGAGGTGCAAAAAGCCACCACCAAGCGGGTGCTCTCTTGGCT
GCGTCGCGAGGCGCGCAAGGGTCTGACCATCGCGGGCTTGTGTACGGCCTCTTATACCCTGGCCAAGGCGGGTTTGCTGG
ATGGCAAGCGCGCGACCATTCACTGGGAAAATTCCGACAGTTTTGCCGAAGAGTTCGAAGATGTGGATCTGACCAAATCG
GTCTTTGTGATCGATGGCAATCGTCTGTCGACCGCGGGGGGCACCTCGTCGATCGACCTCATGCTCAAGATCATTGCCGA
CGACCATGGCGAGGAGCTTGCCAATATGGTGGCGGATCAGCTGATCTATTCGTCGATCCGCACCGATCAGGACACCCAGC
GCCTGTCGATTCCGACCCGCATCGGCGTGCGCCATCCCAAACTCTCGATGGTGATCCAGATGATGGAGAAGAACATCGAA
GAGCCGATCAGCCCGTCGATCCTCGCAGAAGACGTGGGCATGTCGACGCGTCAGCTTGAGCGGTTGTTCCGCCGATACCT
CAACCGCAGCCCCAAGCGGTACTACATGGAGCTGCGCCTGCAAAAGGCTCGCAACCTCCTGATGCAGACAGATATGAGCG
TCATCAATGTGGCGCTGGCCTGTGGCTTTGCATCGCCGTCGCATTTCTCCAAATGCTACCGCGCTCATTACGACACCACG
CCCTATCGAGAGCGTGGCAGCAAGGGCGTACGCCACATCACCTGA

Upstream 100 bases:

>100_bases
ATGACGCTATCCTATGAGCAGGGTCTTTGAATTCGCGGCCATCGTGTCGCGTGGCTTTCCCAGCTCCGTCTAAAAGACCA
GATTTGTAAGGACCAGAGCC

Downstream 100 bases:

>100_bases
GTTTGCTCAGTTCGGGGTGATCCGAAAGAGGGCGCCCTCGTATTCCGAGGCAAACCAGATGCTGCCATCGGGGGCTTCGC
GGATATCGCGCACCCTTGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MQTKPEAIPELTSGGKHRRFTFVLLDQFTLLCFSAAMESLRIANRMAGRDLYSWTLVGEGGETVTCSAGTVFQVDSDLTE
LQRDDTIMLCGGIEVQKATTKRVLSWLRREARKGLTIAGLCTASYTLAKAGLLDGKRATIHWENSDSFAEEFEDVDLTKS
VFVIDGNRLSTAGGTSSIDLMLKIIADDHGEELANMVADQLIYSSIRTDQDTQRLSIPTRIGVRHPKLSMVIQMMEKNIE
EPISPSILAEDVGMSTRQLERLFRRYLNRSPKRYYMELRLQKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTT
PYRERGSKGVRHIT

Sequences:

>Translated_334_residues
MQTKPEAIPELTSGGKHRRFTFVLLDQFTLLCFSAAMESLRIANRMAGRDLYSWTLVGEGGETVTCSAGTVFQVDSDLTE
LQRDDTIMLCGGIEVQKATTKRVLSWLRREARKGLTIAGLCTASYTLAKAGLLDGKRATIHWENSDSFAEEFEDVDLTKS
VFVIDGNRLSTAGGTSSIDLMLKIIADDHGEELANMVADQLIYSSIRTDQDTQRLSIPTRIGVRHPKLSMVIQMMEKNIE
EPISPSILAEDVGMSTRQLERLFRRYLNRSPKRYYMELRLQKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTT
PYRERGSKGVRHIT
>Mature_334_residues
MQTKPEAIPELTSGGKHRRFTFVLLDQFTLLCFSAAMESLRIANRMAGRDLYSWTLVGEGGETVTCSAGTVFQVDSDLTE
LQRDDTIMLCGGIEVQKATTKRVLSWLRREARKGLTIAGLCTASYTLAKAGLLDGKRATIHWENSDSFAEEFEDVDLTKS
VFVIDGNRLSTAGGTSSIDLMLKIIADDHGEELANMVADQLIYSSIRTDQDTQRLSIPTRIGVRHPKLSMVIQMMEKNIE
EPISPSILAEDVGMSTRQLERLFRRYLNRSPKRYYMELRLQKARNLLMQTDMSVINVALACGFASPSHFSKCYRAHYDTT
PYRERGSKGVRHIT

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=95, Percent_Identity=30.5263157894737, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37534; Mature: 37534

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTKPEAIPELTSGGKHRRFTFVLLDQFTLLCFSAAMESLRIANRMAGRDLYSWTLVGEG
CCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
GETVTCSAGTVFQVDSDLTELQRDDTIMLCGGIEVQKATTKRVLSWLRREARKGLTIAGL
CCEEEECCCEEEEECCHHHHHCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHCCCEEEEH
CTASYTLAKAGLLDGKRATIHWENSDSFAEEFEDVDLTKSVFVIDGNRLSTAGGTSSIDL
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCEEECCCCCCHHHH
MLKIIADDHGEELANMVADQLIYSSIRTDQDTQRLSIPTRIGVRHPKLSMVIQMMEKNIE
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHEECCHHCCCCCCHHHHHHHHHHHHHC
EPISPSILAEDVGMSTRQLERLFRRYLNRSPKRYYMELRLQKARNLLMQTDMSVINVALA
CCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGFASPSHFSKCYRAHYDTTPYRERGSKGVRHIT
HCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MQTKPEAIPELTSGGKHRRFTFVLLDQFTLLCFSAAMESLRIANRMAGRDLYSWTLVGEG
CCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
GETVTCSAGTVFQVDSDLTELQRDDTIMLCGGIEVQKATTKRVLSWLRREARKGLTIAGL
CCEEEECCCEEEEECCHHHHHCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHCCCEEEEH
CTASYTLAKAGLLDGKRATIHWENSDSFAEEFEDVDLTKSVFVIDGNRLSTAGGTSSIDL
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCEEECCCCCCHHHH
MLKIIADDHGEELANMVADQLIYSSIRTDQDTQRLSIPTRIGVRHPKLSMVIQMMEKNIE
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHEECCHHCCCCCCHHHHHHHHHHHHHC
EPISPSILAEDVGMSTRQLERLFRRYLNRSPKRYYMELRLQKARNLLMQTDMSVINVALA
CCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGFASPSHFSKCYRAHYDTTPYRERGSKGVRHIT
HCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]