| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081109
Identifier: 99081109
GI number: 99081109
Start: 1365684
End: 1366631
Strand: Direct
Name: 99081109
Synonym: TM1040_1268
Alternate gene names: NA
Gene position: 1365684-1366631 (Clockwise)
Preceding gene: 99081097
Following gene: 99081111
Centisome position: 42.67
GC content: 62.34
Gene sequence:
>948_bases ATGATGTTTCGCGGTCAAGACGACACAGATAAAAAGACAGGGTTGGATAAAGTGGTAGCTATGGATCGCTTTCGCACACG TTCGAACGTGTCGCCTCTGCGTCAGGCCGAGGCCTATTGGACCGCACTGCGTCGCGGGGATGACATTCCCAGCCGCTCGC AGGTCGACCCGCGCGGTCTTGAAAACATCCTGAGTCAGACCTTCATTCTGGAGCGTGTTGCACCGGGCATCGCGCGATTC CGCCTTGCCGGGCAAAAGGTCAACGAGCTTGCGGGGATGGAAGTGCGCGGTATGCCTCTGACTGCGTTTTTCACCGCCGA GTCCCGCAAGACCGTGAGCGCCGCGCTCGAGCACATGTTCGACGACCCCTCCATTCTGGAATTTGAACTGCACACCCAGG CCACCCGTCTGCGCGGCAGCCGCACCGCAAAGATGATCCTGCTGCCGCTGCGCAGTGATCTCGGCGATGTGAGCCGGGCG CTGGGCGTCATGGTCTCTGAAGGGGCAGCAAGCCGCGTGTCGCAACGCTTCCTCGTCGACAGCTGCGACATTCGCAAGAT CACCAAGGCCAGCGAGTCCAAAACTGCGCCCGAGTTCAAGGCCGCACCCCGCGTGTCCGAACCCCAGATGCAGGGCCAAT CGCAGCGCGATCTCACGAACAAACCGGTGAGTACCGGTGGTTTCAGCGAGCCGCGCACGGGATTTGAACGCAAATCCCCG AGCCTGATGGATGAGGCCCGCTCGCTTCTGGATCGGGCCCGCCGCGAAAACCGCGACGCTTTGAAATCTGCCCGCACGCC TGCCCGGGCCGATGCGCGCCCCGAGGGTCCTGTGACGCTGGAGACCGTCTCCACCACCGATGTCGAAAAACTTGTTTCGC GCCCGCCGCGTGGTGGCAAGCTGAAGAAAGGCGCGTCGCACCTGCGTCTTGTGGTTTCGCGGGACTGA
Upstream 100 bases:
>100_bases TGTGTCATGTTAACTTCAAGGTAACCACTATGGCGTTAACACTTGAGCATGGGCCTCCTGCCAAGTTTCGATGCTGGAAC CGGATGCAGAGGACAAGAGA
Downstream 100 bases:
>100_bases TTATTAAAATTCGAATCGAAAACGCCAAGAATTCTTATAAGTTTCAAGCTACTGGACATAGACCTTGAAGCATTGACGCC CGAACGCAGAACGCGTTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFILERVAPGIARF RLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRA LGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD
Sequences:
>Translated_315_residues MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFILERVAPGIARF RLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRA LGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD >Mature_315_residues MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFILERVAPGIARF RLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRA LGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD
Specific function: Unknown
COG id: COG5388
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34921; Mature: 34921
Theoretical pI: Translated: 10.96; Mature: 10.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGL CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH ENILSQTFILERVAPGIARFRLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCHHHHHHHHHHHC DDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRALGVMVSEGAASRVSQRFLVD CCCCEEEEEHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC SCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP CCCHHHHHHHHCCCCCCCHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCC LKKGASHLRLVVSRD CCCCCCCEEEEEECC >Mature Secondary Structure MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGL CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH ENILSQTFILERVAPGIARFRLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCHHHHHHHHHHHC DDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRALGVMVSEGAASRVSQRFLVD CCCCEEEEEHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC SCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP CCCHHHHHHHHCCCCCCCHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGK HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCC LKKGASHLRLVVSRD CCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA