Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081109

Identifier: 99081109

GI number: 99081109

Start: 1365684

End: 1366631

Strand: Direct

Name: 99081109

Synonym: TM1040_1268

Alternate gene names: NA

Gene position: 1365684-1366631 (Clockwise)

Preceding gene: 99081097

Following gene: 99081111

Centisome position: 42.67

GC content: 62.34

Gene sequence:

>948_bases
ATGATGTTTCGCGGTCAAGACGACACAGATAAAAAGACAGGGTTGGATAAAGTGGTAGCTATGGATCGCTTTCGCACACG
TTCGAACGTGTCGCCTCTGCGTCAGGCCGAGGCCTATTGGACCGCACTGCGTCGCGGGGATGACATTCCCAGCCGCTCGC
AGGTCGACCCGCGCGGTCTTGAAAACATCCTGAGTCAGACCTTCATTCTGGAGCGTGTTGCACCGGGCATCGCGCGATTC
CGCCTTGCCGGGCAAAAGGTCAACGAGCTTGCGGGGATGGAAGTGCGCGGTATGCCTCTGACTGCGTTTTTCACCGCCGA
GTCCCGCAAGACCGTGAGCGCCGCGCTCGAGCACATGTTCGACGACCCCTCCATTCTGGAATTTGAACTGCACACCCAGG
CCACCCGTCTGCGCGGCAGCCGCACCGCAAAGATGATCCTGCTGCCGCTGCGCAGTGATCTCGGCGATGTGAGCCGGGCG
CTGGGCGTCATGGTCTCTGAAGGGGCAGCAAGCCGCGTGTCGCAACGCTTCCTCGTCGACAGCTGCGACATTCGCAAGAT
CACCAAGGCCAGCGAGTCCAAAACTGCGCCCGAGTTCAAGGCCGCACCCCGCGTGTCCGAACCCCAGATGCAGGGCCAAT
CGCAGCGCGATCTCACGAACAAACCGGTGAGTACCGGTGGTTTCAGCGAGCCGCGCACGGGATTTGAACGCAAATCCCCG
AGCCTGATGGATGAGGCCCGCTCGCTTCTGGATCGGGCCCGCCGCGAAAACCGCGACGCTTTGAAATCTGCCCGCACGCC
TGCCCGGGCCGATGCGCGCCCCGAGGGTCCTGTGACGCTGGAGACCGTCTCCACCACCGATGTCGAAAAACTTGTTTCGC
GCCCGCCGCGTGGTGGCAAGCTGAAGAAAGGCGCGTCGCACCTGCGTCTTGTGGTTTCGCGGGACTGA

Upstream 100 bases:

>100_bases
TGTGTCATGTTAACTTCAAGGTAACCACTATGGCGTTAACACTTGAGCATGGGCCTCCTGCCAAGTTTCGATGCTGGAAC
CGGATGCAGAGGACAAGAGA

Downstream 100 bases:

>100_bases
TTATTAAAATTCGAATCGAAAACGCCAAGAATTCTTATAAGTTTCAAGCTACTGGACATAGACCTTGAAGCATTGACGCC
CGAACGCAGAACGCGTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFILERVAPGIARF
RLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRA
LGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP
SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD

Sequences:

>Translated_315_residues
MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFILERVAPGIARF
RLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRA
LGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP
SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD
>Mature_315_residues
MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGLENILSQTFILERVAPGIARF
RLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMFDDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRA
LGVMVSEGAASRVSQRFLVDSCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP
SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGKLKKGASHLRLVVSRD

Specific function: Unknown

COG id: COG5388

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34921; Mature: 34921

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
ENILSQTFILERVAPGIARFRLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCHHHHHHHHHHHC
DDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRALGVMVSEGAASRVSQRFLVD
CCCCEEEEEHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
SCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP
CCCHHHHHHHHCCCCCCCHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCC
LKKGASHLRLVVSRD
CCCCCCCEEEEEECC
>Mature Secondary Structure
MMFRGQDDTDKKTGLDKVVAMDRFRTRSNVSPLRQAEAYWTALRRGDDIPSRSQVDPRGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
ENILSQTFILERVAPGIARFRLAGQKVNELAGMEVRGMPLTAFFTAESRKTVSAALEHMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCHHHHHHHHHHHC
DDPSILEFELHTQATRLRGSRTAKMILLPLRSDLGDVSRALGVMVSEGAASRVSQRFLVD
CCCCEEEEEHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
SCDIRKITKASESKTAPEFKAAPRVSEPQMQGQSQRDLTNKPVSTGGFSEPRTGFERKSP
CCCHHHHHHHHCCCCCCCHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
SLMDEARSLLDRARRENRDALKSARTPARADARPEGPVTLETVSTTDVEKLVSRPPRGGK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCC
LKKGASHLRLVVSRD
CCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA