Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081089

Identifier: 99081089

GI number: 99081089

Start: 1342183

End: 1342761

Strand: Direct

Name: 99081089

Synonym: TM1040_1248

Alternate gene names: NA

Gene position: 1342183-1342761 (Clockwise)

Preceding gene: 99081088

Following gene: 99081090

Centisome position: 41.93

GC content: 55.27

Gene sequence:

>579_bases
ATGAACTTCAAAGACCTATTGGTCGAAACTATCGTTAATCCTGCCTCGGCTGCGCGCCGGATCATGGCGCTCAATCTTAC
TGACGAAGTGGTCTGGACGGGGTTTGCGCTGAATGTTGTGCTCAGCGTTCTGCTCTATGCAGGGCAGGGCGTGTTGCTGG
GCGATCCCTCCAATGCGCTCTTTCCGGGACTGAGCCCCGCACTCTTTGGCGCGTTCCTTGTCGTGCTGCAGCTCAGCTAC
ACTGCCGCGTCGATGGTTGCGGCGAGGTGGATGGGCGGAGACGCAGAATTTGGCACCATTCTGGGACTGCTCGTCTGGCT
GCGCATCGTGAATATCGTTGTGCAGGTTATTGCGATTGCGATGGTTTTTGTCATTGCACCCTTGGCCGTTCTGTTTAACT
TCGCAGCTGCGCTCTATGGGCTCTATGTCTTGGCGCACTTCACTAAAGAAGGGTTTGGCCTCTCTTCGCTTGGCAAATCT
GCAGGCGTGATCCTGTTGGCCGGGCTTGGTGCGATGATCGCTGTTTTGATCCTGATGGGCCTTTTTGCGCCCACAATTCT
GGAGACGTCCAATGTATGA

Upstream 100 bases:

>100_bases
GGCCGAGCCCTGCACTGAGTTCAGTTGGACTTTTGTGGCTTGCTGTTTTCCTTTGGTTCTGGATCTCTGGTCTGATCGAG
GCCTACTGGGGTAAAAACTG

Downstream 100 bases:

>100_bases
TGTCGAAAAAATCCGCTCTGACTTTCCGATCCTGTCACGCGAAGTGAACGGAAAGCCGCTGGTCTATCTCGATAACGGGG
CCTCTGCGCAGAAACCTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNFKDLLVETIVNPASAARRIMALNLTDEVVWTGFALNVVLSVLLYAGQGVLLGDPSNALFPGLSPALFGAFLVVLQLSY
TAASMVAARWMGGDAEFGTILGLLVWLRIVNIVVQVIAIAMVFVIAPLAVLFNFAAALYGLYVLAHFTKEGFGLSSLGKS
AGVILLAGLGAMIAVLILMGLFAPTILETSNV

Sequences:

>Translated_192_residues
MNFKDLLVETIVNPASAARRIMALNLTDEVVWTGFALNVVLSVLLYAGQGVLLGDPSNALFPGLSPALFGAFLVVLQLSY
TAASMVAARWMGGDAEFGTILGLLVWLRIVNIVVQVIAIAMVFVIAPLAVLFNFAAALYGLYVLAHFTKEGFGLSSLGKS
AGVILLAGLGAMIAVLILMGLFAPTILETSNV
>Mature_192_residues
MNFKDLLVETIVNPASAARRIMALNLTDEVVWTGFALNVVLSVLLYAGQGVLLGDPSNALFPGLSPALFGAFLVVLQLSY
TAASMVAARWMGGDAEFGTILGLLVWLRIVNIVVQVIAIAMVFVIAPLAVLFNFAAALYGLYVLAHFTKEGFGLSSLGKS
AGVILLAGLGAMIAVLILMGLFAPTILETSNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20157; Mature: 20157

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKDLLVETIVNPASAARRIMALNLTDEVVWTGFALNVVLSVLLYAGQGVLLGDPSNAL
CCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
FPGLSPALFGAFLVVLQLSYTAASMVAARWMGGDAEFGTILGLLVWLRIVNIVVQVIAIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MVFVIAPLAVLFNFAAALYGLYVLAHFTKEGFGLSSLGKSAGVILLAGLGAMIAVLILMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
LFAPTILETSNV
HHHHHHHHCCCC
>Mature Secondary Structure
MNFKDLLVETIVNPASAARRIMALNLTDEVVWTGFALNVVLSVLLYAGQGVLLGDPSNAL
CCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
FPGLSPALFGAFLVVLQLSYTAASMVAARWMGGDAEFGTILGLLVWLRIVNIVVQVIAIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MVFVIAPLAVLFNFAAALYGLYVLAHFTKEGFGLSSLGKSAGVILLAGLGAMIAVLILMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
LFAPTILETSNV
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA