| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081088
Identifier: 99081088
GI number: 99081088
Start: 1341698
End: 1342183
Strand: Direct
Name: 99081088
Synonym: TM1040_1247
Alternate gene names: NA
Gene position: 1341698-1342183 (Clockwise)
Preceding gene: 99081087
Following gene: 99081089
Centisome position: 41.92
GC content: 57.41
Gene sequence:
>486_bases ATGGCTGTGACCGCAGACATCACGGCGACATATCGGGGGCCGCGCAAGGTGATTGCGCGGCTTCTCGCTATGGGGCCGCG TGAAGACCGGCTTTTGGCTTTTGTAATGGGCGCTTGCGTGCTGTTGTTCATTGCACAGATGCCGAGATTGGCCCGTGAGG CTCATCTGAGTGGGCAAGAGCTGAATATGCTGCTGGGCGGAGCCTTGATGGGAATCATCTTCATCGCTCCTTTGGCGCTC TATGCGCTTGCGCTGATCTCGCACCTGGTGGTGCGACTGGTCGGAGGGCAGGGCGATGCCTACTGTGGTCGGCTTGCCCT GTTCTGGGCACTTCTGGCGTCATCGCCATTGCTGTTGCTCAATGGTCTGGTGGCAGGCTTTATTGGGCCGAGCCCTGCAC TGAGTTCAGTTGGACTTTTGTGGCTTGCTGTTTTCCTTTGGTTCTGGATCTCTGGTCTGATCGAGGCCTACTGGGGTAAA AACTGA
Upstream 100 bases:
>100_bases TCCTGGCCGAAGCGGTTGAGGAAATCGAAGACGAAGAGATCGCCGCAAGCATCAACGACCGCCTTTACGGCTGGCTCGCA CGGCGGCGCTGAGGTCCGGG
Downstream 100 bases:
>100_bases TGAACTTCAAAGACCTATTGGTCGAAACTATCGTTAATCCTGCCTCGGCTGCGCGCCGGATCATGGCGCTCAATCTTACT GACGAAGTGGTCTGGACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALMGIIFIAPLAL YALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGK N
Sequences:
>Translated_161_residues MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALMGIIFIAPLAL YALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGK N >Mature_160_residues AVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALMGIIFIAPLALY ALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17292; Mature: 17161
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQE CCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LNMLLGGALMGIIFIAPLALYALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH NGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGKN HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQE CCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LNMLLGGALMGIIFIAPLALYALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH NGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGKN HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA