Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99081088

Identifier: 99081088

GI number: 99081088

Start: 1341698

End: 1342183

Strand: Direct

Name: 99081088

Synonym: TM1040_1247

Alternate gene names: NA

Gene position: 1341698-1342183 (Clockwise)

Preceding gene: 99081087

Following gene: 99081089

Centisome position: 41.92

GC content: 57.41

Gene sequence:

>486_bases
ATGGCTGTGACCGCAGACATCACGGCGACATATCGGGGGCCGCGCAAGGTGATTGCGCGGCTTCTCGCTATGGGGCCGCG
TGAAGACCGGCTTTTGGCTTTTGTAATGGGCGCTTGCGTGCTGTTGTTCATTGCACAGATGCCGAGATTGGCCCGTGAGG
CTCATCTGAGTGGGCAAGAGCTGAATATGCTGCTGGGCGGAGCCTTGATGGGAATCATCTTCATCGCTCCTTTGGCGCTC
TATGCGCTTGCGCTGATCTCGCACCTGGTGGTGCGACTGGTCGGAGGGCAGGGCGATGCCTACTGTGGTCGGCTTGCCCT
GTTCTGGGCACTTCTGGCGTCATCGCCATTGCTGTTGCTCAATGGTCTGGTGGCAGGCTTTATTGGGCCGAGCCCTGCAC
TGAGTTCAGTTGGACTTTTGTGGCTTGCTGTTTTCCTTTGGTTCTGGATCTCTGGTCTGATCGAGGCCTACTGGGGTAAA
AACTGA

Upstream 100 bases:

>100_bases
TCCTGGCCGAAGCGGTTGAGGAAATCGAAGACGAAGAGATCGCCGCAAGCATCAACGACCGCCTTTACGGCTGGCTCGCA
CGGCGGCGCTGAGGTCCGGG

Downstream 100 bases:

>100_bases
TGAACTTCAAAGACCTATTGGTCGAAACTATCGTTAATCCTGCCTCGGCTGCGCGCCGGATCATGGCGCTCAATCTTACT
GACGAAGTGGTCTGGACGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALMGIIFIAPLAL
YALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGK
N

Sequences:

>Translated_161_residues
MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALMGIIFIAPLAL
YALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGK
N
>Mature_160_residues
AVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQELNMLLGGALMGIIFIAPLALY
ALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLLNGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17292; Mature: 17161

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQE
CCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LNMLLGGALMGIIFIAPLALYALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
NGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGKN
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVTADITATYRGPRKVIARLLAMGPREDRLLAFVMGACVLLFIAQMPRLAREAHLSGQE
CCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LNMLLGGALMGIIFIAPLALYALALISHLVVRLVGGQGDAYCGRLALFWALLASSPLLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
NGLVAGFIGPSPALSSVGLLWLAVFLWFWISGLIEAYWGKN
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA