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The map label for this gene is sufD [H]

Identifier: 99081087

GI number: 99081087

Start: 1340409

End: 1341689

Strand: Direct

Name: sufD [H]

Synonym: TM1040_1246

Alternate gene names: 99081087

Gene position: 1340409-1341689 (Clockwise)

Preceding gene: 99081086

Following gene: 99081088

Centisome position: 41.88

GC content: 59.8

Gene sequence:

>1281_bases
ATGGGACTTCCCGAGCTGAAACAAACAACGACGGAGGCACGCCTGGCGGCGTTGTCCTTGCCCGAAGGTGGATGTCTTGA
GGCGGCGCGTCGCGCCGCCGTGGCCCGGGTTCAGACCATGGGGCTGCCGGACCGTCGGGATGAGTATTGGAAATACACCC
GCCCGGACACGCTGACCGCGGCAGACGCGCCTGCGGCTGCCGTTTTCGACAGTGGCGAGGCGCCGATGTTCGACAACTTC
GACCGGCTGCGCATCGTTTTTGTAGATGGCGTGTTTGACGCAGAGGCCTCTGATGACCTCGCACTTGAGGGTGTGAGCAT
CGAGCGTTTGGCTGACATAGATCGCAAAGATATCCATTGGGCCAAGGACATCTACGGTGTTCTTGAAGCGCGTGGCCAAT
CCCCGGTGGAGCGTCCTCTGGCAGCGCTCAACACGGCTTTTGCGACGGATGGCGTGGTCATCCACGTCACCGGCAAGCCG
TCCAAGCCGATCAACTTGGTCTATCAGCACGCGAGCGAAAACTCGGATGCGATCCTGCACCATGTGATCAAAGTCGACAG
CGGGGCCGAAGCGACGATCCTCGAAAATGGCCCAGCCGCGTCTCGCTTTAACAAAGCGATGGAAATCGACATCGCTGACA
CGGGCAAGCTGCATCTGGTGCGCGCCCAGGGGCGCGATCACGAGCGCCGCGCCGCAACGCATCTCTTTGCGCGGCTTGGG
ACGGAGTCCGTTTTCAAGAGCTTTACGCTGACGGTGAACGGTGTGCTGACGCGCAACGAGGCCGTGGTCGAATTCCTCGG
TGATGACGCTGTGGCGCATCTGGCTGGTGCCTGTGTTGGTGATGGTGATTTTCACCACGATGACACCGTGTTTGTTACGC
ATGACGCGGTCAATTGTGAGAGCCGCCAGGTCTTTAAGAAGGTCCTGCGCAACGGCGCCACCGGCGTTTTCCAGGGTAAG
ATCCTTGTGAAGGAAGGCGCGCAAAAGACTGATGGATATCAGATTTCTCAGTCTTTGCTCTTGGATGACGACAGCCAGTT
CCTCGCCAAGCCAGAGCTTGAGATCTACGCAGACGACGTGGCCTGTTCGCACGGGTCCACCTCCGGTGCCATTGATGAGG
ATGGTTTGTTTTACCTGCGTTCTCGTGGCGTGCCTGAGGCCGAGGCCACTGACCTGATGACGCTGGCGTTCCTGGCCGAA
GCGGTTGAGGAAATCGAAGACGAAGAGATCGCCGCAAGCATCAACGACCGCCTTTACGGCTGGCTCGCACGGCGGCGCTG
A

Upstream 100 bases:

>100_bases
ACATCATGGCGGATGGTCGCATCGTTAAAACCGGTGGTCCCGAGCTGGCGCTTGAGGTCGAAAACAACGGTTACGCAGAC
ATCCTGTCCGAGGTGGCATA

Downstream 100 bases:

>100_bases
GGTCCGGGATGGCTGTGACCGCAGACATCACGGCGACATATCGGGGGCCGCGCAAGGTGATTGCGCGGCTTCTCGCTATG
GGGCCGCGTGAAGACCGGCT

Product: SufBD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MGLPELKQTTTEARLAALSLPEGGCLEAARRAAVARVQTMGLPDRRDEYWKYTRPDTLTAADAPAAAVFDSGEAPMFDNF
DRLRIVFVDGVFDAEASDDLALEGVSIERLADIDRKDIHWAKDIYGVLEARGQSPVERPLAALNTAFATDGVVIHVTGKP
SKPINLVYQHASENSDAILHHVIKVDSGAEATILENGPAASRFNKAMEIDIADTGKLHLVRAQGRDHERRAATHLFARLG
TESVFKSFTLTVNGVLTRNEAVVEFLGDDAVAHLAGACVGDGDFHHDDTVFVTHDAVNCESRQVFKKVLRNGATGVFQGK
ILVKEGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDEDGLFYLRSRGVPEAEATDLMTLAFLAE
AVEEIEDEEIAASINDRLYGWLARRR

Sequences:

>Translated_426_residues
MGLPELKQTTTEARLAALSLPEGGCLEAARRAAVARVQTMGLPDRRDEYWKYTRPDTLTAADAPAAAVFDSGEAPMFDNF
DRLRIVFVDGVFDAEASDDLALEGVSIERLADIDRKDIHWAKDIYGVLEARGQSPVERPLAALNTAFATDGVVIHVTGKP
SKPINLVYQHASENSDAILHHVIKVDSGAEATILENGPAASRFNKAMEIDIADTGKLHLVRAQGRDHERRAATHLFARLG
TESVFKSFTLTVNGVLTRNEAVVEFLGDDAVAHLAGACVGDGDFHHDDTVFVTHDAVNCESRQVFKKVLRNGATGVFQGK
ILVKEGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDEDGLFYLRSRGVPEAEATDLMTLAFLAE
AVEEIEDEEIAASINDRLYGWLARRR
>Mature_425_residues
GLPELKQTTTEARLAALSLPEGGCLEAARRAAVARVQTMGLPDRRDEYWKYTRPDTLTAADAPAAAVFDSGEAPMFDNFD
RLRIVFVDGVFDAEASDDLALEGVSIERLADIDRKDIHWAKDIYGVLEARGQSPVERPLAALNTAFATDGVVIHVTGKPS
KPINLVYQHASENSDAILHHVIKVDSGAEATILENGPAASRFNKAMEIDIADTGKLHLVRAQGRDHERRAATHLFARLGT
ESVFKSFTLTVNGVLTRNEAVVEFLGDDAVAHLAGACVGDGDFHHDDTVFVTHDAVNCESRQVFKKVLRNGATGVFQGKI
LVKEGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDEDGLFYLRSRGVPEAEATDLMTLAFLAEA
VEEIEDEEIAASINDRLYGWLARRR

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=409, Percent_Identity=28.1173594132029, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46377; Mature: 46246

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPELKQTTTEARLAALSLPEGGCLEAARRAAVARVQTMGLPDRRDEYWKYTRPDTLTA
CCCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
ADAPAAAVFDSGEAPMFDNFDRLRIVFVDGVFDAEASDDLALEGVSIERLADIDRKDIHW
CCCCCEEEECCCCCCCCCCCCCEEEEEEECEECCCCCCCEEECCCCHHHHHCCCHHHHHH
AKDIYGVLEARGQSPVERPLAALNTAFATDGVVIHVTGKPSKPINLVYQHASENSDAILH
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHH
HVIKVDSGAEATILENGPAASRFNKAMEIDIADTGKLHLVRAQGRDHERRAATHLFARLG
EEEEECCCCCEEEEECCCCHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHC
TESVFKSFTLTVNGVLTRNEAVVEFLGDDAVAHLAGACVGDGDFHHDDTVFVTHDAVNCE
HHHHHHEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHEECCCCCCCCCEEEEEECCCCCC
SRQVFKKVLRNGATGVFQGKILVKEGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDV
HHHHHHHHHHCCCCEEEECEEEEECCCCCCCCEEEEHHHEECCCCHHHCCCCEEEEECCE
ACSHGSTSGAIDEDGLFYLRSRGVPEAEATDLMTLAFLAEAVEEIEDEEIAASINDRLYG
EECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
WLARRR
HHHCCC
>Mature Secondary Structure 
GLPELKQTTTEARLAALSLPEGGCLEAARRAAVARVQTMGLPDRRDEYWKYTRPDTLTA
CCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
ADAPAAAVFDSGEAPMFDNFDRLRIVFVDGVFDAEASDDLALEGVSIERLADIDRKDIHW
CCCCCEEEECCCCCCCCCCCCCEEEEEEECEECCCCCCCEEECCCCHHHHHCCCHHHHHH
AKDIYGVLEARGQSPVERPLAALNTAFATDGVVIHVTGKPSKPINLVYQHASENSDAILH
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHH
HVIKVDSGAEATILENGPAASRFNKAMEIDIADTGKLHLVRAQGRDHERRAATHLFARLG
EEEEECCCCCEEEEECCCCHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHC
TESVFKSFTLTVNGVLTRNEAVVEFLGDDAVAHLAGACVGDGDFHHDDTVFVTHDAVNCE
HHHHHHEEEEEEEEEEECCHHHHHHHCCHHHHHHHHHEECCCCCCCCCEEEEEECCCCCC
SRQVFKKVLRNGATGVFQGKILVKEGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDV
HHHHHHHHHHCCCCEEEECEEEEECCCCCCCCEEEEHHHEECCCCHHHCCCCEEEEECCE
ACSHGSTSGAIDEDGLFYLRSRGVPEAEATDLMTLAFLAEAVEEIEDEEIAASINDRLYG
EECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
WLARRR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]