| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99081085
Identifier: 99081085
GI number: 99081085
Start: 1338827
End: 1339591
Strand: Direct
Name: 99081085
Synonym: TM1040_1244
Alternate gene names: NA
Gene position: 1338827-1339591 (Clockwise)
Preceding gene: 99081084
Following gene: 99081086
Centisome position: 41.83
GC content: 56.6
Gene sequence:
>765_bases GTGCTGTTTGACCCTTCAAAACTCCCTGACATTGTTGCCCGGATCTCTTCCGGGCAATCCGTGGGGTTTGCGGATGTGTC GCTCTACACGAGCGAAATTCACGGGCGCCGCATGGTGTTTTCTGTCGATATGCAGCGCGACCCGATCCAGCGCTCCCATC GCGAAGGGCACTTTTACGAAGAGGAAGAACTCTCTGTAATCAAGTCTCTTTTCCCGCTTGGGGGCACCTTTGTCGACATC GGGGCCAATGTTGGAAATCACGGGCTTTATGCCGCAGCCTTCCTGTCGGCTGCGCGCGTGATCCCCTTTGAGCCGAACCC AAAAGCGCTAAAGCTCTTGCTGGCAAATATCTCTGCCAATGGGCTCGCCCCCAAATATGACCTCAGCCATCTGGGCAAAG GTCTGGGGGATGCGCCACGCGCGGGGTTTGGGATGGAGGCCAGAGACCGCAATCTCGGGGCTGCAAAGATGCTTGCCGGA GAGGGTGATATCGAGATCACCACGGGGGATCTGGCGCTTCAGGATGAGCAGGTCGATTTCATCAAGATCGACGTGGAAGG CATGGAAATCCTGGTGCTTTCCGGCCTGCAGGACACGATCAAACGATGCCGGCCAGCCTTGCTTGTCGAGGTCGACCGGG AAAACGATGCAGCGTTTCACGCCCTGATTGAACAGATGGGCTACGGGGTGTTCGACACCCTACAGCGCTATAACCGAAAC AAGAATTACGTCATCAAGCCGCTTCAGTTGGATGCGGAGAGCTGA
Upstream 100 bases:
>100_bases GGTTGTGGGGGTCGACCTCGATTATGAAGTTGTCGGGCAATCGATGCTCATGGTCTCTGCCAGCGGCACCGCTGTCGTGA TCGGCTAAAGAGGAAACGCC
Downstream 100 bases:
>100_bases CGAAACCACGATCTGCAGATCGCGCAGCCAGCGCTGACTGCAAGCAGAAAAAGGCGAAAAACATGCTAGAAATCAAAAAC CTGCACGTGAAACTTGAGGA
Product: methyltransferase FkbM
Products: NA
Alternate protein names: Methyltransferase FkbM Family; Methyltransferase; SAM-Dependent Methyltransferase; Lipopolysaccharide Biosynthesis Protein; FkbM Family Methyltransferase
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MLFDPSKLPDIVARISSGQSVGFADVSLYTSEIHGRRMVFSVDMQRDPIQRSHREGHFYEEEELSVIKSLFPLGGTFVDI GANVGNHGLYAAAFLSAARVIPFEPNPKALKLLLANISANGLAPKYDLSHLGKGLGDAPRAGFGMEARDRNLGAAKMLAG EGDIEITTGDLALQDEQVDFIKIDVEGMEILVLSGLQDTIKRCRPALLVEVDRENDAAFHALIEQMGYGVFDTLQRYNRN KNYVIKPLQLDAES
Sequences:
>Translated_254_residues MLFDPSKLPDIVARISSGQSVGFADVSLYTSEIHGRRMVFSVDMQRDPIQRSHREGHFYEEEELSVIKSLFPLGGTFVDI GANVGNHGLYAAAFLSAARVIPFEPNPKALKLLLANISANGLAPKYDLSHLGKGLGDAPRAGFGMEARDRNLGAAKMLAG EGDIEITTGDLALQDEQVDFIKIDVEGMEILVLSGLQDTIKRCRPALLVEVDRENDAAFHALIEQMGYGVFDTLQRYNRN KNYVIKPLQLDAES >Mature_254_residues MLFDPSKLPDIVARISSGQSVGFADVSLYTSEIHGRRMVFSVDMQRDPIQRSHREGHFYEEEELSVIKSLFPLGGTFVDI GANVGNHGLYAAAFLSAARVIPFEPNPKALKLLLANISANGLAPKYDLSHLGKGLGDAPRAGFGMEARDRNLGAAKMLAG EGDIEITTGDLALQDEQVDFIKIDVEGMEILVLSGLQDTIKRCRPALLVEVDRENDAAFHALIEQMGYGVFDTLQRYNRN KNYVIKPLQLDAES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27877; Mature: 27877
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFDPSKLPDIVARISSGQSVGFADVSLYTSEIHGRRMVFSVDMQRDPIQRSHREGHFYE CCCCCCCHHHHHHHHCCCCCCCEEHHEEEHHHCCCCEEEEEECCCCCCHHHHHCCCCCCC EEELSVIKSLFPLGGTFVDIGANVGNHGLYAAAFLSAARVIPFEPNPKALKLLLANISAN HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC GLAPKYDLSHLGKGLGDAPRAGFGMEARDRNLGAAKMLAGEGDIEITTGDLALQDEQVDF CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCEEEEECCEEEECCCCEE IKIDVEGMEILVLSGLQDTIKRCRPALLVEVDRENDAAFHALIEQMGYGVFDTLQRYNRN EEEEECCEEEEEECCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCC KNYVIKPLQLDAES CCEEEEEEEECCCC >Mature Secondary Structure MLFDPSKLPDIVARISSGQSVGFADVSLYTSEIHGRRMVFSVDMQRDPIQRSHREGHFYE CCCCCCCHHHHHHHHCCCCCCCEEHHEEEHHHCCCCEEEEEECCCCCCHHHHHCCCCCCC EEELSVIKSLFPLGGTFVDIGANVGNHGLYAAAFLSAARVIPFEPNPKALKLLLANISAN HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC GLAPKYDLSHLGKGLGDAPRAGFGMEARDRNLGAAKMLAGEGDIEITTGDLALQDEQVDF CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCEEEEECCEEEECCCCEE IKIDVEGMEILVLSGLQDTIKRCRPALLVEVDRENDAAFHALIEQMGYGVFDTLQRYNRN EEEEECCEEEEEECCHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCC KNYVIKPLQLDAES CCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA