Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080509

Identifier: 99080509

GI number: 99080509

Start: 714982

End: 715449

Strand: Reverse

Name: 99080509

Synonym: TM1040_0668

Alternate gene names: NA

Gene position: 715449-714982 (Counterclockwise)

Preceding gene: 99080510

Following gene: 99080508

Centisome position: 22.35

GC content: 58.76

Gene sequence:

>468_bases
ATGCAACAGTTACTGCATAAAATCTGGTCCCAGACCTTTCAGCCCATGTTGTCGCGCCCGCGCAGATTGCAAGTGGCAGC
GCTATGCTATCGCCGTGACAAGTCGGGGTGCGAAGTCCTGTTGATCACCAGCCGGGACACCGGTCGCTGGGTGGTACCAA
AAGGCTGGCCAATGGAGGGCAAATCCAGCGCCGAGAGTGCCGCTCAGGAAGCCTGGGAAGAAGCTGGCGTGCGCTGTGGC
CGTTTTGAGGAAACTCCTGTCGGGCGCTTTGAATATGACAAGCGCCTGAACAACGGAGCACTGGAGCCTCTGGAGACACT
GGTCTACGCGATCGAAGTGCAGGAGTTGCGAGACGACTTCCCCGAAGCCCATGAACGTACCCGAAAATGGGTCAGCCCCA
AGGACGCCGCAGAGATGGTGCGCGAGCCTCAACTCCAGGACCTTTTGCGCGGTTTCAGCCCATCTTGA

Upstream 100 bases:

>100_bases
GAGCGCAAAGACGTTGTGCACAAGGGCGAACGGGACTATACCCCGTTGCTCAATCCTCCAAAGAGTATAAGAATTGGCCG
AAAAAGGCTTCGAGCACTCG

Downstream 100 bases:

>100_bases
TCCTGTCGCCCCTGAACTCCCCCGAGACTGTATCCTTTTGCATCGCGCGCGGGCCTCTCCCACGCCAGCGCGCAAAGCAG
TGCGCAAGGCAGGAACTCGC

Product: NUDIX hydrolase

Products: NA

Alternate protein names: Nudix Hydrolase; Nudix Domain Protein; Hydrolase Nudix Family; NTP Pyrophosphohydrolase Protein MuT/Nudix Family; Hydrolase NUDIX Family; NUDIX Family Hydrolase; MutT/NUDIX Family NTP Pyrophosphohydrolase; MutT Family NTP Pyrophosphatase; NTP Pyrophosphohydrolase MutT Family; NUDIX Domain-Containing Protein; NTP Pyrophosphohydrolase Protein; Hydrolase NUDIX Family Protein; Bis(5-Nucleosidyl)-Tetraphosphatase; MutT/Nudix Family Phosphohydrolase; NUDIX Superfamily Hydrolase; Orf_Bo; NUDIX Family Protein

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQEAWEEAGVRCG
RFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS

Sequences:

>Translated_155_residues
MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQEAWEEAGVRCG
RFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS
>Mature_155_residues
MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEGKSSAESAAQEAWEEAGVRCG
RFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDFPEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17905; Mature: 17905

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEG
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCC
KSSAESAAQEAWEEAGVRCGRFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDF
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS
HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MQQLLHKIWSQTFQPMLSRPRRLQVAALCYRRDKSGCEVLLITSRDTGRWVVPKGWPMEG
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCC
KSSAESAAQEAWEEAGVRCGRFEETPVGRFEYDKRLNNGALEPLETLVYAIEVQELRDDF
CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PEAHERTRKWVSPKDAAEMVREPQLQDLLRGFSPS
HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA