Click here to switch to the map view.

The map label for this gene is 99080412

Identifier: 99080412

GI number: 99080412

Start: 608489

End: 608803

Strand: Reverse

Name: 99080412

Synonym: TM1040_0571

Alternate gene names: NA

Gene position: 608803-608489 (Counterclockwise)

Preceding gene: 99080418

Following gene: 99080411

Centisome position: 19.02

GC content: 58.1

Gene sequence:

>315_bases
ATGAAACACCACCAAGGAAAGACGACAATGAGCGACACACTGGAACAGGCAGCCGCCAAGCTGAACGAAAAAATGGATGG
TGGCTTTGACAGCTCCGCCAAGTTCGAGATCACCGGCATGGGCGCCATCATTCTGGATGCCAATGGCGCACGCGTGGGCG
ACGAGGACGCAGATGTGACCATGACCGCCGACGCCGAAACCTTTGAAGAAATCCTGTCGGGCGAGTTGAACCCGACCGCA
GCTTTCATGGGCGGCAAACTCACCATCGACGGCGATATGGGCGTTGCAATGCAGCTGGCGCAGGCACTGGCCTGA

Upstream 100 bases:

>100_bases
TTTGAGATTCGTCCGCGTTTTGCCCATAGTCCAAAGGGTAGCGGCACGGGGCGGAATTACCAGTGCCAGAACAAACGGCT
TCACAGTTTTGTGCGAAGGC

Downstream 100 bases:

>100_bases
CGACAATGAAGGATCAGCCAATGGCAGAAACCGCCCCCGCGCCCTATTTCAGCGAGATTGCGCGCGGCCCGGATCAGGTC
GAGGCCCATTGGCTGACCAC

Product: sterol-binding

Products: NA

Alternate protein names: Non-Specific Lipid-Transfer Protein; SCP-2 Sterol Transfer Family

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MKHHQGKTTMSDTLEQAAAKLNEKMDGGFDSSAKFEITGMGAIILDANGARVGDEDADVTMTADAETFEEILSGELNPTA
AFMGGKLTIDGDMGVAMQLAQALA

Sequences:

>Translated_104_residues
MKHHQGKTTMSDTLEQAAAKLNEKMDGGFDSSAKFEITGMGAIILDANGARVGDEDADVTMTADAETFEEILSGELNPTA
AFMGGKLTIDGDMGVAMQLAQALA
>Mature_104_residues
MKHHQGKTTMSDTLEQAAAKLNEKMDGGFDSSAKFEITGMGAIILDANGARVGDEDADVTMTADAETFEEILSGELNPTA
AFMGGKLTIDGDMGVAMQLAQALA

Specific function: Unknown

COG id: COG3255

COG function: function code I; Putative sterol carrier protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10840; Mature: 10840

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHQGKTTMSDTLEQAAAKLNEKMDGGFDSSAKFEITGMGAIILDANGARVGDEDADVT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCEE
MTADAETFEEILSGELNPTAAFMGGKLTIDGDMGVAMQLAQALA
EEECHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHHHHC
>Mature Secondary Structure
MKHHQGKTTMSDTLEQAAAKLNEKMDGGFDSSAKFEITGMGAIILDANGARVGDEDADVT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCEE
MTADAETFEEILSGELNPTAAFMGGKLTIDGDMGVAMQLAQALA
EEECHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA