| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080397
Identifier: 99080397
GI number: 99080397
Start: 593672
End: 594505
Strand: Reverse
Name: 99080397
Synonym: TM1040_0556
Alternate gene names: NA
Gene position: 594505-593672 (Counterclockwise)
Preceding gene: 99080398
Following gene: 99080396
Centisome position: 18.57
GC content: 60.79
Gene sequence:
>834_bases ATGAGCACCCCCTGCATCCTCTGCGTCGCCATCACCGGGTCCTTGCCGACCAAGGACAACAATCCGGCGGTGCCGATCAC CATCTCCGAGCAGATCGAGAGCACCCATGAAGCCTTTGAGGCCGGCGCAACGATCTGCCACGCGCATGTCAGGAATGACG ATCAAACGCCCTCTTCGGACCCGGAGAAATTCGAACGTCTCAAGGAAGGGCTGGAAAAACACTGCCCCGGCATGATCATC CAGTTCTCCACGGGGGGGCGGTCGGGTGCAGGCAAGGCGCGTGGGGGCATGTTGCCGCTTGCGCCCGACATGGCTTCGCT CTCGGTTGGGTCGAACAATTTCCCGACCCGCGTCTATGAGAATCCACCTGACCTCGTGGACTGGCTGGCGGGCGAGATGC GCACGCATCAGGTGACACCCGAAGTGGAAGCCTTTGACCTCAGCCATATCCTGAATGCGATTGCGCTACACAAGAGCGGT GCGCTTTACGGCAAACTCTATGTGCAGTTTGTTATGGGCGTGAAAAACGCCATGCCCGCCGACAAGGAGGTCTTCGACTT CTATGTTGATCTGGTCAAACGCCGCGCGCCCGATGCAAACTGGTGTGCCGCAGGGATTGGCGCAAACCAATTGGTCGTCA ACGAATGGGCCATCGCCGCCGGGGGCCATACGCGCGCCGGGCTTGAAGACAACGTGCGCCTCGACCGCAATACGCTGGCC CCTTCTAACGCGGCACTGATCCGGCGCGCTGCCGAACTCTGCGAAAAATATGAGCGCCCCGTCGCCACCTGGCAACAGGC CAGAGAGATCCTTGACGTGCCATTGCGGGCCTGA
Upstream 100 bases:
>100_bases AACCCTCATTGCCGAGGCACAGGGCGACGGGCAGTATCACTTTGACATCCGCCTCCAGGGGCACAATGAAACCGTCTTTT TCGACATCTGAGGCCCGATC
Downstream 100 bases:
>100_bases TCTGCTGTTCTGACTCCGCTTCGAAGGACCGTGCCACCTGTGAATCCGCTGACCTCATCGAACCCCTATTTTGCAGGCCT TTTTGCCGACCAGGAAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEGLEKHCPGMII QFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSG ALYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA
Sequences:
>Translated_277_residues MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEGLEKHCPGMII QFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSG ALYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA >Mature_276_residues STPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEGLEKHCPGMIIQ FSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSGA LYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLAP SNAALIRRAAELCEKYERPVATWQQAREILDVPLRA
Specific function: Unknown
COG id: COG3246
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30112; Mature: 29981
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSD CCCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCC PEKFERLKEGLEKHCPGMIIQFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYE HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC NPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSGALYGKLYVQFVMGVKNAMPA CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC DKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA CHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECEEEECCCCCCCCCCCCCEECCCCCC PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure STPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSD CCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCC PEKFERLKEGLEKHCPGMIIQFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYE HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC NPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSGALYGKLYVQFVMGVKNAMPA CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC DKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA CHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECEEEECCCCCCCCCCCCCEECCCCCC PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA