| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080363
Identifier: 99080363
GI number: 99080363
Start: 548599
End: 548973
Strand: Reverse
Name: 99080363
Synonym: TM1040_0522
Alternate gene names: NA
Gene position: 548973-548599 (Counterclockwise)
Preceding gene: 99080364
Following gene: 99080362
Centisome position: 17.15
GC content: 61.07
Gene sequence:
>375_bases ATGTCCGAGGTCACTGCAAGCTGCCTGTGCGGCGATATCCGCGTCAGAGCCTCCGGGTCCCCCATCGGTGTCGGCCTGTG TCACTGCATGGATTGTCGCAAGCACCATGGTGCGGTGTTCTGGGCCGCGGCGGTTTACCCGGCTGAGGCGGTCGAAGTAT TCGGCCAGACGCAACAATATCAGGGCCGCCATTTTTGCCCGAGATGCGGATCATCGGTCTATTCATGCAGCGAAGGTGAG GTGGAGCTCCATCTCGGAGCAATGGATCAGCCAAACCAGTTCACGCCGACCTATGAGCTATGGACAGACCGGCGCGAGCA CTGGCTCACCCCACTCGCCAGAGCCCATCAGCATTCTCGCAATCGCGGGGCGTGA
Upstream 100 bases:
>100_bases TGACACTGGTGGCCTTTGCCAATCGCACCCGTGCCAGGTTTGCCTTGACCGGAGCAGACCACCAGGCAAGCTGAGCCCTC ATGCGCTGAGGAGGTCCACC
Downstream 100 bases:
>100_bases GGACCGGGGCGGCGTGCGCCGGAGGCGTCTTTCTATGCAGTATGTCTTGCAGGACACAGCTGCGCGACAATTTCACACGG CCCGTCTGATCCAAGACTGT
Product: glutathione-dependent formaldehyde-activating, GFA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MSEVTASCLCGDIRVRASGSPIGVGLCHCMDCRKHHGAVFWAAAVYPAEAVEVFGQTQQYQGRHFCPRCGSSVYSCSEGE VELHLGAMDQPNQFTPTYELWTDRREHWLTPLARAHQHSRNRGA
Sequences:
>Translated_124_residues MSEVTASCLCGDIRVRASGSPIGVGLCHCMDCRKHHGAVFWAAAVYPAEAVEVFGQTQQYQGRHFCPRCGSSVYSCSEGE VELHLGAMDQPNQFTPTYELWTDRREHWLTPLARAHQHSRNRGA >Mature_123_residues SEVTASCLCGDIRVRASGSPIGVGLCHCMDCRKHHGAVFWAAAVYPAEAVEVFGQTQQYQGRHFCPRCGSSVYSCSEGEV ELHLGAMDQPNQFTPTYELWTDRREHWLTPLARAHQHSRNRGA
Specific function: Unknown
COG id: COG3791
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13807; Mature: 13675
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 8.9 %Cys+Met (Translated Protein) 6.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 8.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEVTASCLCGDIRVRASGSPIGVGLCHCMDCRKHHGAVFWAAAVYPAEAVEVFGQTQQY CCCCCCHHEECCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHCCHHHHHHHCCCCCC QGRHFCPRCGSSVYSCSEGEVELHLGAMDQPNQFTPTYELWTDRREHWLTPLARAHQHSR CCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCC NRGA CCCC >Mature Secondary Structure SEVTASCLCGDIRVRASGSPIGVGLCHCMDCRKHHGAVFWAAAVYPAEAVEVFGQTQQY CCCCCHHEECCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHCCHHHHHHHCCCCCC QGRHFCPRCGSSVYSCSEGEVELHLGAMDQPNQFTPTYELWTDRREHWLTPLARAHQHSR CCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCC NRGA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA