| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hisZ [H]
Identifier: 99080345
GI number: 99080345
Start: 531808
End: 532899
Strand: Direct
Name: hisZ [H]
Synonym: TM1040_0504
Alternate gene names: 99080345
Gene position: 531808-532899 (Clockwise)
Preceding gene: 99080344
Following gene: 99080346
Centisome position: 16.61
GC content: 63.37
Gene sequence:
>1092_bases ATGCCCAACAGATCCCAAATCGAAGCCCGCGCGGCACTATTGCGCCAGCGTTTTGAGGTGGCAGGCGGCGTTGTCGTCGA TCCGCCGCTGCTGCAGCCTGCCGATGTGCTCCTTGACCTTTACGGCGAGGACATCCGTGCGCGCGCCTATGTGACATCAG ACGCCCTGCGGGGCGAGCAGATGCTGCGCCCGGATTTCACCCTGCCGATGGTCCAGATGCATATGAAAGGGGGCGCGGAA CCTGCGCGATATACCTATGCAGGACAAGTGTTTCGCCGCCAGGAGCATGACCCAGAACGTGCCAATGAATTTGTGCAGGT CGGCTATGAGGTCTTTGACCGCACCGACCCGGCGGACGCGGATGCTGAGGTCTTTGCGCTGTTTCAGCTGCAATTGCGCG GCCTCGAGCTGCGGGTCGCCACCGGGGATATCGGCATCCTGATGGCCGCCGTCGAGGGGCTCAACACCACCGAGGTGCGC AAGGCGGCGTTGCGGCGTCACATCTGGCGCCCACGCCGGTTCCGCGCTCTTCTGGATCGTTTTGCCGGACGCACGCCGAT GTCGGAGAGCCGCAAGAAGCTTTTGTCGACCACCGGTCCGCTGACCGGCAGCGCGCCGGAGATTGGCAAACGCCGCACCG CCGAGATCGACGCACGGGTCGAGACCCTGCGCGCGGATGCAGGCGCGCCGCCAATCTCTGAACATGAGATGGAGGCGCTG GAGGCCTTGCTCGCGGTACGTGAAACGGTTCCTTATGCGCTTGAGCAAATGCGCGATATCGCCGTTGATCTACCGGCTAT CCTGCCTGCCCTTGAACGTTTGGAGGCCCGCTCGGCGGCGATGAAGGCCCGTGGGATTGCAATCGATCAGCTGGATTTCG AGGCTGCATATGGGCGCACATCGATGGAATACTACGACGGCTTCGTGTTTGGCTTTTATGCGGAGCGCCGCCCGGATCTA CCACCGATCGCGACAGGGGGGCGCTATGACGCTCTCACGCGCTATCTGGGGCAAGGGGATGAGATCCCTGCCGTGGGCGG TGTCATCCGCCCCGACCTGATCCTGGCTCTGGAAGGGGAGGCCGAGGCATGA
Upstream 100 bases:
>100_bases GGAAGGAACGCCCCAGCCAGTTTGAAGTGCCCCGCACGGAACTGGTTGCCAAGGTGCGTGAGATCCTCGTCAGCCAATCC AGCGATCGGGAGGGCTGAGC
Downstream 100 bases:
>100_bases GCATCAAACTCGGTGTGCCGTCCAAGGGACGGCTGATGGAGAAAACCTTCGACTGGTTTGCAAAACGCGGTATCACCCTG TCTCGGACCGGTTCTGATCG
Product: ATP phosphoribosyltransferase regulatory subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MPNRSQIEARAALLRQRFEVAGGVVVDPPLLQPADVLLDLYGEDIRARAYVTSDALRGEQMLRPDFTLPMVQMHMKGGAE PARYTYAGQVFRRQEHDPERANEFVQVGYEVFDRTDPADADAEVFALFQLQLRGLELRVATGDIGILMAAVEGLNTTEVR KAALRRHIWRPRRFRALLDRFAGRTPMSESRKKLLSTTGPLTGSAPEIGKRRTAEIDARVETLRADAGAPPISEHEMEAL EALLAVRETVPYALEQMRDIAVDLPAILPALERLEARSAAMKARGIAIDQLDFEAAYGRTSMEYYDGFVFGFYAERRPDL PPIATGGRYDALTRYLGQGDEIPAVGGVIRPDLILALEGEAEA
Sequences:
>Translated_363_residues MPNRSQIEARAALLRQRFEVAGGVVVDPPLLQPADVLLDLYGEDIRARAYVTSDALRGEQMLRPDFTLPMVQMHMKGGAE PARYTYAGQVFRRQEHDPERANEFVQVGYEVFDRTDPADADAEVFALFQLQLRGLELRVATGDIGILMAAVEGLNTTEVR KAALRRHIWRPRRFRALLDRFAGRTPMSESRKKLLSTTGPLTGSAPEIGKRRTAEIDARVETLRADAGAPPISEHEMEAL EALLAVRETVPYALEQMRDIAVDLPAILPALERLEARSAAMKARGIAIDQLDFEAAYGRTSMEYYDGFVFGFYAERRPDL PPIATGGRYDALTRYLGQGDEIPAVGGVIRPDLILALEGEAEA >Mature_362_residues PNRSQIEARAALLRQRFEVAGGVVVDPPLLQPADVLLDLYGEDIRARAYVTSDALRGEQMLRPDFTLPMVQMHMKGGAEP ARYTYAGQVFRRQEHDPERANEFVQVGYEVFDRTDPADADAEVFALFQLQLRGLELRVATGDIGILMAAVEGLNTTEVRK AALRRHIWRPRRFRALLDRFAGRTPMSESRKKLLSTTGPLTGSAPEIGKRRTAEIDARVETLRADAGAPPISEHEMEALE ALLAVRETVPYALEQMRDIAVDLPAILPALERLEARSAAMKARGIAIDQLDFEAAYGRTSMEYYDGFVFGFYAERRPDLP PIATGGRYDALTRYLGQGDEIPAVGGVIRPDLILALEGEAEA
Specific function: Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine [H]
COG id: COG3705
COG function: function code E; ATP phosphoribosyltransferase involved in histidine biosynthesis
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family. HisZ subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR004516 [H]
Pfam domain/function: PF00587 tRNA-synt_2b [H]
EC number: NA
Molecular weight: Translated: 40279; Mature: 40147
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNRSQIEARAALLRQRFEVAGGVVVDPPLLQPADVLLDLYGEDIRARAYVTSDALRGEQ CCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCCHHHEEEEEHHHHCCHH MLRPDFTLPMVQMHMKGGAEPARYTYAGQVFRRQEHDPERANEFVQVGYEVFDRTDPADA HCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC DAEVFALFQLQLRGLELRVATGDIGILMAAVEGLNTTEVRKAALRRHIWRPRRFRALLDR CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH FAGRTPMSESRKKLLSTTGPLTGSAPEIGKRRTAEIDARVETLRADAGAPPISEHEMEAL HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH EALLAVRETVPYALEQMRDIAVDLPAILPALERLEARSAAMKARGIAIDQLDFEAAYGRT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHCCCC SMEYYDGFVFGFYAERRPDLPPIATGGRYDALTRYLGQGDEIPAVGGVIRPDLILALEGE HHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC AEA CCC >Mature Secondary Structure PNRSQIEARAALLRQRFEVAGGVVVDPPLLQPADVLLDLYGEDIRARAYVTSDALRGEQ CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCCHHHEEEEEHHHHCCHH MLRPDFTLPMVQMHMKGGAEPARYTYAGQVFRRQEHDPERANEFVQVGYEVFDRTDPADA HCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC DAEVFALFQLQLRGLELRVATGDIGILMAAVEGLNTTEVRKAALRRHIWRPRRFRALLDR CHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH FAGRTPMSESRKKLLSTTGPLTGSAPEIGKRRTAEIDARVETLRADAGAPPISEHEMEAL HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH EALLAVRETVPYALEQMRDIAVDLPAILPALERLEARSAAMKARGIAIDQLDFEAAYGRT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHCCCC SMEYYDGFVFGFYAERRPDLPPIATGGRYDALTRYLGQGDEIPAVGGVIRPDLILALEGE HHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCC AEA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA