Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080342

Identifier: 99080342

GI number: 99080342

Start: 529337

End: 529831

Strand: Reverse

Name: 99080342

Synonym: TM1040_0501

Alternate gene names: NA

Gene position: 529831-529337 (Counterclockwise)

Preceding gene: 99080343

Following gene: 99080340

Centisome position: 16.55

GC content: 58.38

Gene sequence:

>495_bases
ATGGCCCGATCACTCAAAACACTTCTGTCCATTTCGCTGGTGGCAAGCCTGCCTGTAGCCGCCACGGCCGACCCCAAACC
CGCAAACGCGCGCCCTGCTCCGGTGGACAAGGTGCTCTCGACCTATTCCGGCAAAACCGCCATCTGGAGACAGAACTGCG
AGGGCGGCGTTTACTTCTCGCCCAACAATCAGGCTCGCGCCTGGTGCTCTGAACAGTCCGAGAGCCTCGGCGTCGGCACA
TGGAGCGTTTCTGCGGATGGAACGCTTTGCCAGACCCTCACCTGGTACTACCCAGAGGGCAACGGCGCAGGCAGTTCCGT
CTCAGAACCTATTTGCGTTCAACATGTTGTGAACGGCTGGGGTGTGTTGTACCGCAGTTGGGAGGGAGACTCCGAGTGGT
GGCCCGTGACCAATTCCAACAACGTCAGAGACTTCAAGAACGGCTATGTATTCCAGTCCGAAGTGAACTCTGTGAAGAAC
AAGCTCGGCCTCTGA

Upstream 100 bases:

>100_bases
GTTGCGCGGGCTTCGCCCTTGCTACGGTCGTTAAAGTTTGGACAAGATTTTGCACAAATTGACCCATCTGCCCATTCTGA
TGCGCAAGGAGACATGCCCG

Downstream 100 bases:

>100_bases
GCACGCCCGAGCCTCGCACAAGACGGCTTGCGTAAGGCGCAAGACCTGCGGGGCTCTAGGTGTTTTGGGCAACTCTTTTG
GCGCGCGCGGTAGCTTGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCSEQSESLGVGT
WSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKN
KLGL

Sequences:

>Translated_164_residues
MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCSEQSESLGVGT
WSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKN
KLGL
>Mature_163_residues
ARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCSEQSESLGVGTW
SVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKNK
LGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17821; Mature: 17690

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFS
CCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEC
PNNQARAWCSEQSESLGVGTWSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGW
CCCCCHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCC
GVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKNKLGL
EEEEECCCCCCCEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
ARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFS
CHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEC
PNNQARAWCSEQSESLGVGTWSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGW
CCCCCHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCC
GVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKNKLGL
EEEEECCCCCCCEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA