| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080342
Identifier: 99080342
GI number: 99080342
Start: 529337
End: 529831
Strand: Reverse
Name: 99080342
Synonym: TM1040_0501
Alternate gene names: NA
Gene position: 529831-529337 (Counterclockwise)
Preceding gene: 99080343
Following gene: 99080340
Centisome position: 16.55
GC content: 58.38
Gene sequence:
>495_bases ATGGCCCGATCACTCAAAACACTTCTGTCCATTTCGCTGGTGGCAAGCCTGCCTGTAGCCGCCACGGCCGACCCCAAACC CGCAAACGCGCGCCCTGCTCCGGTGGACAAGGTGCTCTCGACCTATTCCGGCAAAACCGCCATCTGGAGACAGAACTGCG AGGGCGGCGTTTACTTCTCGCCCAACAATCAGGCTCGCGCCTGGTGCTCTGAACAGTCCGAGAGCCTCGGCGTCGGCACA TGGAGCGTTTCTGCGGATGGAACGCTTTGCCAGACCCTCACCTGGTACTACCCAGAGGGCAACGGCGCAGGCAGTTCCGT CTCAGAACCTATTTGCGTTCAACATGTTGTGAACGGCTGGGGTGTGTTGTACCGCAGTTGGGAGGGAGACTCCGAGTGGT GGCCCGTGACCAATTCCAACAACGTCAGAGACTTCAAGAACGGCTATGTATTCCAGTCCGAAGTGAACTCTGTGAAGAAC AAGCTCGGCCTCTGA
Upstream 100 bases:
>100_bases GTTGCGCGGGCTTCGCCCTTGCTACGGTCGTTAAAGTTTGGACAAGATTTTGCACAAATTGACCCATCTGCCCATTCTGA TGCGCAAGGAGACATGCCCG
Downstream 100 bases:
>100_bases GCACGCCCGAGCCTCGCACAAGACGGCTTGCGTAAGGCGCAAGACCTGCGGGGCTCTAGGTGTTTTGGGCAACTCTTTTG GCGCGCGCGGTAGCTTGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCSEQSESLGVGT WSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKN KLGL
Sequences:
>Translated_164_residues MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCSEQSESLGVGT WSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKN KLGL >Mature_163_residues ARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFSPNNQARAWCSEQSESLGVGTW SVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGWGVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKNK LGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17821; Mature: 17690
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFS CCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEC PNNQARAWCSEQSESLGVGTWSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGW CCCCCHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCC GVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKNKLGL EEEEECCCCCCCEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCC >Mature Secondary Structure ARSLKTLLSISLVASLPVAATADPKPANARPAPVDKVLSTYSGKTAIWRQNCEGGVYFS CHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEC PNNQARAWCSEQSESLGVGTWSVSADGTLCQTLTWYYPEGNGAGSSVSEPICVQHVVNGW CCCCCHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCC GVLYRSWEGDSEWWPVTNSNNVRDFKNGYVFQSEVNSVKNKLGL EEEEECCCCCCCEECCCCCCCCCCCCCCEEEHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA