| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hcrC [H]
Identifier: 99080340
GI number: 99080340
Start: 523693
End: 525096
Strand: Reverse
Name: hcrC [H]
Synonym: TM1040_0499
Alternate gene names: 99080340
Gene position: 525096-523693 (Counterclockwise)
Preceding gene: 99080342
Following gene: 99080339
Centisome position: 16.4
GC content: 62.61
Gene sequence:
>1404_bases ATGACGATTACCTTTCATCTCAATGGTGAACAGGTCTCGCTTGCGAAACCGGACCCCACCACGACGCTTCTGGACTGGCT GCGAGAAGAGCGCGGCCTCACCGGCACCAAAGAAGGCTGTAACGAGGGCGACTGCGGGGCCTGCACGGTCATGGTGACTG ATCAGAGCGGCGCCAAGGCGCTCAATGCCTGCATTCTCTTTCTGCCTCAGTTGCATGGCAAATCCGTGCGCACCGTGGAA GGTGTCGCAGCACCAATAGGCACGCTGCATCCGGTTCAGCGTGCGATGATCGACCATCACGGCAGCCAGTGCGGCTTCTG CACGCCAGGATTTGTGATGTCGATGGTCACCGCGCATACAAATGGCGCCACAGACCATGACGATCAGCTTGCCGGCAATC TCTGCCGCTGCACCGGCTATGCGCCGATCATCCGTGCTGCCGAGGCCGCTCAGGACGCGCCCGTCCCTGATCATATCGCG CAGGATCGCAGTTTCACCTTTTCAGAAATACCTCTGGGGGAGGACGCAGACCGAGGGGCAGAGCCCCCAAACGCCCTGCG TCCCTGCTCTTCGGATGATCTGGCCAGAGTTTACGCAGCCCGCCCCGAGGCCACGCTGATTGCTGGCGCCACTGATGTGG GGCTTTGGGTCACAAAGCATCTGCGCCAGCTGCGGGATGTGATTTTTCTGGACGGCTGTCGCGACCTCAAGAAGATCACA ATCAGCGACGCGGAGGTGCGCATCGGTGCCATGGCCGATATGAACCACCTGCGCGCCGCCCTTGCGCCCTTGCACCCGTC CTATGCCGAGATGCTGCGCCGCTATGCCAGCCAACAGGTACGCGCGGCCGCCACGCTTGGGGGCAATATCGCCAATGGCT CTCCCATCGGGGACAACCCGCCCGCGCTCATCGCCCTGCGCGCCACACTGCATCTGCGCAAGGGCGACATGCGCCGGAGC CTGCCGCTGCAGGACTTCTTCATAGACTACGGCAAGCAGGACCGCGCGCCCGGCGAATTCATCGAAGCCGTGAGCTTTGA CCGGCAGCCCGACAGCCTGCGGGTCTACAAGCTCTCAAAACGGTTTGATCAGGACATCTCGGCGGTGCTGGGCGCCTTCA ATGTGACCGTCGTGAACGGCAATGTCACGGCTGCTGTGATTGCCTTTGGCGGCATGGCGGCCATTCCCAAACGCGCCACC CACGTCGAGGAGGCACTGGTCGGTCGCCCCTGGACAGAGGCGACGCTTGTGGCTGCACAGGCCACGTTTGATCACGATTT CACGCCCCTGAGCGATATGCGCGCGTCTGCCGCCTACCGGCTCGACTGCGCACGCAATATGCTCCGGCGCTACTTCTCCG ACCTGAACGGAGCGCCGGAACATGTGCTGGAGGTCCAGCCATGA
Upstream 100 bases:
>100_bases AAGCTGGGCGCATCATCCACCAATACTCCCGCAGGCCTTCTACGTCGCATCGAGGGCCGCGCCGCATGGGACAACCGGGT ACCGCGACGGGCTTTTCAAG
Downstream 100 bases:
>100_bases GTGTGTCCACCCCCCTGCCCCATGATGCCGCCGCCCTGCACGTCACGGGCCAGGCCCGCTACGTGGATGACATCCCCACC CCCAAGGGCACACTGCATCT
Product: molybdopterin dehydrogenase, FAD-binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MTITFHLNGEQVSLAKPDPTTTLLDWLREERGLTGTKEGCNEGDCGACTVMVTDQSGAKALNACILFLPQLHGKSVRTVE GVAAPIGTLHPVQRAMIDHHGSQCGFCTPGFVMSMVTAHTNGATDHDDQLAGNLCRCTGYAPIIRAAEAAQDAPVPDHIA QDRSFTFSEIPLGEDADRGAEPPNALRPCSSDDLARVYAARPEATLIAGATDVGLWVTKHLRQLRDVIFLDGCRDLKKIT ISDAEVRIGAMADMNHLRAALAPLHPSYAEMLRRYASQQVRAAATLGGNIANGSPIGDNPPALIALRATLHLRKGDMRRS LPLQDFFIDYGKQDRAPGEFIEAVSFDRQPDSLRVYKLSKRFDQDISAVLGAFNVTVVNGNVTAAVIAFGGMAAIPKRAT HVEEALVGRPWTEATLVAAQATFDHDFTPLSDMRASAAYRLDCARNMLRRYFSDLNGAPEHVLEVQP
Sequences:
>Translated_467_residues MTITFHLNGEQVSLAKPDPTTTLLDWLREERGLTGTKEGCNEGDCGACTVMVTDQSGAKALNACILFLPQLHGKSVRTVE GVAAPIGTLHPVQRAMIDHHGSQCGFCTPGFVMSMVTAHTNGATDHDDQLAGNLCRCTGYAPIIRAAEAAQDAPVPDHIA QDRSFTFSEIPLGEDADRGAEPPNALRPCSSDDLARVYAARPEATLIAGATDVGLWVTKHLRQLRDVIFLDGCRDLKKIT ISDAEVRIGAMADMNHLRAALAPLHPSYAEMLRRYASQQVRAAATLGGNIANGSPIGDNPPALIALRATLHLRKGDMRRS LPLQDFFIDYGKQDRAPGEFIEAVSFDRQPDSLRVYKLSKRFDQDISAVLGAFNVTVVNGNVTAAVIAFGGMAAIPKRAT HVEEALVGRPWTEATLVAAQATFDHDFTPLSDMRASAAYRLDCARNMLRRYFSDLNGAPEHVLEVQP >Mature_466_residues TITFHLNGEQVSLAKPDPTTTLLDWLREERGLTGTKEGCNEGDCGACTVMVTDQSGAKALNACILFLPQLHGKSVRTVEG VAAPIGTLHPVQRAMIDHHGSQCGFCTPGFVMSMVTAHTNGATDHDDQLAGNLCRCTGYAPIIRAAEAAQDAPVPDHIAQ DRSFTFSEIPLGEDADRGAEPPNALRPCSSDDLARVYAARPEATLIAGATDVGLWVTKHLRQLRDVIFLDGCRDLKKITI SDAEVRIGAMADMNHLRAALAPLHPSYAEMLRRYASQQVRAAATLGGNIANGSPIGDNPPALIALRATLHLRKGDMRRSL PLQDFFIDYGKQDRAPGEFIEAVSFDRQPDSLRVYKLSKRFDQDISAVLGAFNVTVVNGNVTAAVIAFGGMAAIPKRATH VEEALVGRPWTEATLVAAQATFDHDFTPLSDMRASAAYRLDCARNMLRRYFSDLNGAPEHVLEVQP
Specific function: Catalyzes reductive dehydroxylation of 4-hydroxybenzoyl- CoA. Reaction is not reversible [H]
COG id: COG4630
COG function: function code F; Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=478, Percent_Identity=29.4979079497908, Blast_Score=156, Evalue=4e-38, Organism=Homo sapiens, GI71773480, Length=484, Percent_Identity=27.8925619834711, Blast_Score=135, Evalue=8e-32, Organism=Escherichia coli, GI1786480, Length=169, Percent_Identity=39.0532544378698, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI1789231, Length=274, Percent_Identity=28.4671532846715, Blast_Score=99, Evalue=7e-22, Organism=Escherichia coli, GI1789232, Length=150, Percent_Identity=40, Blast_Score=91, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17540638, Length=541, Percent_Identity=29.3900184842884, Blast_Score=192, Evalue=4e-49, Organism=Caenorhabditis elegans, GI17539860, Length=466, Percent_Identity=26.3948497854077, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI32566215, Length=462, Percent_Identity=26.1904761904762, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI17737937, Length=477, Percent_Identity=32.4947589098532, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI24647201, Length=518, Percent_Identity=27.027027027027, Blast_Score=141, Evalue=9e-34, Organism=Drosophila melanogaster, GI24647199, Length=497, Percent_Identity=26.1569416498994, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI24647197, Length=465, Percent_Identity=27.9569892473118, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24647195, Length=328, Percent_Identity=29.8780487804878, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI24647193, Length=454, Percent_Identity=24.4493392070485, Blast_Score=99, Evalue=9e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002888 - InterPro: IPR006058 - InterPro: IPR017606 - InterPro: IPR012675 - InterPro: IPR001041 [H]
Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]
EC number: =1.3.99.20 [H]
Molecular weight: Translated: 50504; Mature: 50373
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTITFHLNGEQVSLAKPDPTTTLLDWLREERGLTGTKEGCNEGDCGACTVMVTDQSGAKA CEEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHH LNACILFLPQLHGKSVRTVEGVAAPIGTLHPVQRAMIDHHGSQCGFCTPGFVMSMVTAHT HHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC NGATDHDDQLAGNLCRCTGYAPIIRAAEAAQDAPVPDHIAQDRSFTFSEIPLGEDADRGA CCCCCCCHHHHCCHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCCCCCCCCCC EPPNALRPCSSDDLARVYAARPEATLIAGATDVGLWVTKHLRQLRDVIFLDGCRDLKKIT CCCHHCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHEECCCCCHHHEEE ISDAEVRIGAMADMNHLRAALAPLHPSYAEMLRRYASQQVRAAATLGGNIANGSPIGDNP ECCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PALIALRATLHLRKGDMRRSLPLQDFFIDYGKQDRAPGEFIEAVSFDRQPDSLRVYKLSK CEEEEEEEEHHECCCCHHHCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEHHH RFDQDISAVLGAFNVTVVNGNVTAAVIAFGGMAAIPKRATHVEEALVGRPWTEATLVAAQ HHHHHHHHHHCCEEEEEECCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCCCHHEEEEEE ATFDHDFTPLSDMRASAAYRLDCARNMLRRYFSDLNGAPEHVLEVQP ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEECCC >Mature Secondary Structure TITFHLNGEQVSLAKPDPTTTLLDWLREERGLTGTKEGCNEGDCGACTVMVTDQSGAKA EEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHH LNACILFLPQLHGKSVRTVEGVAAPIGTLHPVQRAMIDHHGSQCGFCTPGFVMSMVTAHT HHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC NGATDHDDQLAGNLCRCTGYAPIIRAAEAAQDAPVPDHIAQDRSFTFSEIPLGEDADRGA CCCCCCCHHHHCCHHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCCEEECCCCCCCCCCCC EPPNALRPCSSDDLARVYAARPEATLIAGATDVGLWVTKHLRQLRDVIFLDGCRDLKKIT CCCHHCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHEECCCCCHHHEEE ISDAEVRIGAMADMNHLRAALAPLHPSYAEMLRRYASQQVRAAATLGGNIANGSPIGDNP ECCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PALIALRATLHLRKGDMRRSLPLQDFFIDYGKQDRAPGEFIEAVSFDRQPDSLRVYKLSK CEEEEEEEEHHECCCCHHHCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEEHHH RFDQDISAVLGAFNVTVVNGNVTAAVIAFGGMAAIPKRATHVEEALVGRPWTEATLVAAQ HHHHHHHHHHCCEEEEEECCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCCCHHEEEEEE ATFDHDFTPLSDMRASAAYRLDCARNMLRRYFSDLNGAPEHVLEVQP ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9490068 [H]