| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is yajO [H]
Identifier: 99080332
GI number: 99080332
Start: 513650
End: 514654
Strand: Reverse
Name: yajO [H]
Synonym: TM1040_0491
Alternate gene names: 99080332
Gene position: 514654-513650 (Counterclockwise)
Preceding gene: 99080334
Following gene: 99080331
Centisome position: 16.08
GC content: 62.69
Gene sequence:
>1005_bases ATGATCAGGCCAAACTCTGCGTTGCGCGCGCCCGGTCTGCGTGTCAGTCTCCGGCGCATGACTGCTCAGACTTGCCCCCC GCTCACCACCCTTGATGGCCATGACGTTGGCCGGTTCGCCTTTGGCTGCATGCAATTTGGCGGACGCGCCGATGCGCAGG CCTCTGCCGAAATGTATGAGGCCTGCCGCGCAGCAGGTCTGCGCCATTTTGATACCGCGTGGCTCTATACCGAGGGCGCC AGCGAAGAGATCCTCGGTCAGTTGATCGCCAAGGACCGCGAGAGCCTCTATGTCGCGACCAAGGTTGGCTTCACCGGCGG CGCCAGCGCGGCGAATATGCGAGCGCAGTTCGATCAGTGCCGACAGCGCCTGAAGCTCGATCAGGTGGATCTTCTGTATT TGCACCGGTTTGACCCTGAAACCCCGCTCGAGGACACGCTGACCTGTTTTGCCGAACTTAAACAGGAAGGGCACATCCGC CATGTTGGCCTGTCAAACTTCGCCGCCTGGCAGGTCATGAAAGCCGTTGCTCTCGCGGCGCGACTGGGCCTCCGGATTGA CGTGCTACAGCCGATGTACTCGCTGGTGAAACGACAGGCCGAGGTGGAAATCCTGCCGATGTGTGCCGACCAGGGGATTT TGCCCGTACCCTATTCGCCGCTGGGCGGCGGGCTCTTGACCGGGAAATATGCGCAAGGCGGCACAGGTCGGTTGAGCGAG GATGAAAACTATCGTGCCCGCTATGGCCAGGATTGGATGCACCGGACAGCCTCCGATCTTCTGCACTTGGCCGAGGATCT TGGCACCGATCCCGCGACGCTGGCAGTCGCATGGGCCGCAGGCCACCCCGCGCGCCCGGCTCCGATCCTCTCGGCACGTT CCGCAACCCAGCTTGCGCCCTCGCTCAAGGCCACGGAATTTGACATGTCTCCAGAACTTTATGCGCGTATCGAAGCCCTG AGCCCCCGCCCGGCCCCCGCCACGGACCGGCTCGAAGAAGCATGA
Upstream 100 bases:
>100_bases GAAACGGGTCGATGAGGGGGCGGATCTTGGCATCAAACATGATCCAGATCTAACCGCTAGACGGTGAAACATCCACTCAC GTTGCCGCTGCCGCGTCGTG
Downstream 100 bases:
>100_bases TAGACACTCTGATCATCGGCGGCGGAGTGGCCGGGCTTGGTGCAGCGGCACATTTGTCGCCATCGCATCAGGTGGTGGTG CTGGAACGCGAGGAGGTGCT
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MIRPNSALRAPGLRVSLRRMTAQTCPPLTTLDGHDVGRFAFGCMQFGGRADAQASAEMYEACRAAGLRHFDTAWLYTEGA SEEILGQLIAKDRESLYVATKVGFTGGASAANMRAQFDQCRQRLKLDQVDLLYLHRFDPETPLEDTLTCFAELKQEGHIR HVGLSNFAAWQVMKAVALAARLGLRIDVLQPMYSLVKRQAEVEILPMCADQGILPVPYSPLGGGLLTGKYAQGGTGRLSE DENYRARYGQDWMHRTASDLLHLAEDLGTDPATLAVAWAAGHPARPAPILSARSATQLAPSLKATEFDMSPELYARIEAL SPRPAPATDRLEEA
Sequences:
>Translated_334_residues MIRPNSALRAPGLRVSLRRMTAQTCPPLTTLDGHDVGRFAFGCMQFGGRADAQASAEMYEACRAAGLRHFDTAWLYTEGA SEEILGQLIAKDRESLYVATKVGFTGGASAANMRAQFDQCRQRLKLDQVDLLYLHRFDPETPLEDTLTCFAELKQEGHIR HVGLSNFAAWQVMKAVALAARLGLRIDVLQPMYSLVKRQAEVEILPMCADQGILPVPYSPLGGGLLTGKYAQGGTGRLSE DENYRARYGQDWMHRTASDLLHLAEDLGTDPATLAVAWAAGHPARPAPILSARSATQLAPSLKATEFDMSPELYARIEAL SPRPAPATDRLEEA >Mature_334_residues MIRPNSALRAPGLRVSLRRMTAQTCPPLTTLDGHDVGRFAFGCMQFGGRADAQASAEMYEACRAAGLRHFDTAWLYTEGA SEEILGQLIAKDRESLYVATKVGFTGGASAANMRAQFDQCRQRLKLDQVDLLYLHRFDPETPLEDTLTCFAELKQEGHIR HVGLSNFAAWQVMKAVALAARLGLRIDVLQPMYSLVKRQAEVEILPMCADQGILPVPYSPLGGGLLTGKYAQGGTGRLSE DENYRARYGQDWMHRTASDLLHLAEDLGTDPATLAVAWAAGHPARPAPILSARSATQLAPSLKATEFDMSPELYARIEAL SPRPAPATDRLEEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Homo sapiens, GI223718702, Length=196, Percent_Identity=40.3061224489796, Blast_Score=121, Evalue=1e-27, Organism=Homo sapiens, GI41152114, Length=263, Percent_Identity=34.2205323193916, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI41327764, Length=226, Percent_Identity=37.6106194690265, Blast_Score=112, Evalue=6e-25, Organism=Homo sapiens, GI27436964, Length=348, Percent_Identity=27.0114942528736, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI27436969, Length=305, Percent_Identity=25.9016393442623, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI4504825, Length=305, Percent_Identity=25.9016393442623, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI27436962, Length=286, Percent_Identity=27.2727272727273, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI27436966, Length=311, Percent_Identity=26.6881028938907, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI223718708, Length=162, Percent_Identity=37.037037037037, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI27436971, Length=302, Percent_Identity=26.158940397351, Blast_Score=88, Evalue=1e-17, Organism=Escherichia coli, GI87081735, Length=309, Percent_Identity=32.6860841423948, Blast_Score=147, Evalue=9e-37, Organism=Escherichia coli, GI1789199, Length=336, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1789375, Length=259, Percent_Identity=28.1853281853282, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788070, Length=316, Percent_Identity=28.4810126582279, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787674, Length=313, Percent_Identity=24.9201277955272, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1788081, Length=158, Percent_Identity=30.379746835443, Blast_Score=65, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6325169, Length=319, Percent_Identity=23.5109717868339, Blast_Score=98, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6323998, Length=334, Percent_Identity=26.3473053892216, Blast_Score=96, Evalue=7e-21, Organism=Saccharomyces cerevisiae, GI6319958, Length=299, Percent_Identity=25.4180602006689, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322615, Length=207, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6319951, Length=288, Percent_Identity=24.3055555555556, Blast_Score=80, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 36511; Mature: 36511
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00062 ALDOKETO_REDUCTASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRPNSALRAPGLRVSLRRMTAQTCPPLTTLDGHDVGRFAFGCMQFGGRADAQASAEMYE CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH ACRAAGLRHFDTAWLYTEGASEEILGQLIAKDRESLYVATKVGFTGGASAANMRAQFDQC HHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH RQRLKLDQVDLLYLHRFDPETPLEDTLTCFAELKQEGHIRHVGLSNFAAWQVMKAVALAA HHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH RLGLRIDVLQPMYSLVKRQAEVEILPMCADQGILPVPYSPLGGGLLTGKYAQGGTGRLSE HHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC DENYRARYGQDWMHRTASDLLHLAEDLGTDPATLAVAWAAGHPARPAPILSARSATQLAP CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCCCCCCCCCHHHHCC SLKATEFDMSPELYARIEALSPRPAPATDRLEEA CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCC >Mature Secondary Structure MIRPNSALRAPGLRVSLRRMTAQTCPPLTTLDGHDVGRFAFGCMQFGGRADAQASAEMYE CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH ACRAAGLRHFDTAWLYTEGASEEILGQLIAKDRESLYVATKVGFTGGASAANMRAQFDQC HHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH RQRLKLDQVDLLYLHRFDPETPLEDTLTCFAELKQEGHIRHVGLSNFAAWQVMKAVALAA HHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH RLGLRIDVLQPMYSLVKRQAEVEILPMCADQGILPVPYSPLGGGLLTGKYAQGGTGRLSE HHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC DENYRARYGQDWMHRTASDLLHLAEDLGTDPATLAVAWAAGHPARPAPILSARSATQLAP CCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCCCCCCCCCHHHHCC SLKATEFDMSPELYARIEALSPRPAPATDRLEEA CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]