| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080334
Identifier: 99080334
GI number: 99080334
Start: 515592
End: 516668
Strand: Reverse
Name: 99080334
Synonym: TM1040_0493
Alternate gene names: NA
Gene position: 516668-515592 (Counterclockwise)
Preceding gene: 99080335
Following gene: 99080332
Centisome position: 16.14
GC content: 59.42
Gene sequence:
>1077_bases ATGAAACTCACCAAACTTCTTGCCAGTGCAGCGGTTGCACTGGGTCTGGCCGCCGGTGGCGCGCTGGCCGAGGACAAAAC CAAAGTCGGCTTTGTCTATGTTGGCCCCGTCGGAGATGGCGGCTGGACCTACGAGCACGATCAGGGCCGCAAAGCGGTTG TCGAGGAGTTCGGCGACGCGGTTGAAACCGTCTATGTTGAAAATGTTGCCGAAGGCCCAGACGCCGAGCGCGTGATCACG CAGATGGCTCTTCAGGGTGCGGATCTGATCTTCACCACCTCCTTTGGGTACATGGATCCGACCATCAATGTCGCCAAGAA GTTCCCGAACGTGAAATTCGAACACGCCACCGGCTACAAGCGCGCGGAAAACGTGTCGACCTACTCGGCCCGGTTCTACG AAGGTCGCGCCGTGCAAGGCGTTATTGCGGGTCATATGACCGAGAGCAACATCATCGGCTACATTGGCTCTTATCCGATC CCGGAAGTAATTCGCGGCATCAACTCGGCCTATATCCACGCCAAGAAAGTAAACCCCGACGTGCAGTTCAAGATCGTCTG GGCCTTCACCTGGTTTGACCCCGCCAAGGAAGCGGACGCTGCGAAGGTGCTGATCGAGCAGGGCGCAGATGTCATTCTGC AGCACACAGACTCCACCGCCCCGCAAGCCGCAGCGCAGGCCGCAGGCAACGTGATCACCTTTGGTCAGGCCTCCGACATG GCCGAGTATGCGCCCAAGCCGCGCGTCTCCTCCATCATCGACAACTGGGCGCCCTATTATATCGCGCGCACCAAAGCGGT CATGGACGGCACCTGGACGTCTGTTGACACCTGGGACGGTATCGGCCCGGGCATGGTCGGTATTGGCGAGATCACCGATG CGGTTCCTGAAGACGTCAAAGCCGAAGCGCTGGCTCTGAAGGACGCGATCGCCTCTGGCGAATACCACCCCTTCACCGGC CCGCTGAAAAAGCAGGACGGCTCGGTGTTCCTCGCCGAAGGTGAAACTGCGGACGACGGCACCCTTGCTGGCATGAACTT CTACGTTGAAGGCATCGAAGGCACGATCCCCGAATAA
Upstream 100 bases:
>100_bases AGGTGCGGGGTGTTTGCCTGCGCCGATCAAGACCTGTCCAGTCTCGGATCGAACCGGGGCGGACATTCAAACATGGAACC AATCAGGGGGAACCCATCAC
Downstream 100 bases:
>100_bases TCGGCGATCGTCACCTGAGACCTTGAAAGACCCGCCAGCACAGGCGGGTCTTTTTTGTCGGAGGCCGTCTGTGGTATCGC CGGGTTGCGGAATTTGGCAC
Product: basic membrane lipoprotein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; Basic Membrane Protein Family Protein; ABC Transporter Periplasmic/Surface Lipoprotein; ABC Transporter; Lipoprotein Periplasmic Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; Tat Pathway Signal Sequence/Basic Membrane Protein; Twin-Arginine Translocation Pathway Signal; Basic Membrane Lipoprotein Family Protein; Surface Lipoprotein; Basic Membrane Protein A-Like Protein; Signal Peptide Protein; ABC Transporter Periplasmic Protein; Outer Membrane Lipoprotein
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MKLTKLLASAAVALGLAAGGALAEDKTKVGFVYVGPVGDGGWTYEHDQGRKAVVEEFGDAVETVYVENVAEGPDAERVIT QMALQGADLIFTTSFGYMDPTINVAKKFPNVKFEHATGYKRAENVSTYSARFYEGRAVQGVIAGHMTESNIIGYIGSYPI PEVIRGINSAYIHAKKVNPDVQFKIVWAFTWFDPAKEADAAKVLIEQGADVILQHTDSTAPQAAAQAAGNVITFGQASDM AEYAPKPRVSSIIDNWAPYYIARTKAVMDGTWTSVDTWDGIGPGMVGIGEITDAVPEDVKAEALALKDAIASGEYHPFTG PLKKQDGSVFLAEGETADDGTLAGMNFYVEGIEGTIPE
Sequences:
>Translated_358_residues MKLTKLLASAAVALGLAAGGALAEDKTKVGFVYVGPVGDGGWTYEHDQGRKAVVEEFGDAVETVYVENVAEGPDAERVIT QMALQGADLIFTTSFGYMDPTINVAKKFPNVKFEHATGYKRAENVSTYSARFYEGRAVQGVIAGHMTESNIIGYIGSYPI PEVIRGINSAYIHAKKVNPDVQFKIVWAFTWFDPAKEADAAKVLIEQGADVILQHTDSTAPQAAAQAAGNVITFGQASDM AEYAPKPRVSSIIDNWAPYYIARTKAVMDGTWTSVDTWDGIGPGMVGIGEITDAVPEDVKAEALALKDAIASGEYHPFTG PLKKQDGSVFLAEGETADDGTLAGMNFYVEGIEGTIPE >Mature_358_residues MKLTKLLASAAVALGLAAGGALAEDKTKVGFVYVGPVGDGGWTYEHDQGRKAVVEEFGDAVETVYVENVAEGPDAERVIT QMALQGADLIFTTSFGYMDPTINVAKKFPNVKFEHATGYKRAENVSTYSARFYEGRAVQGVIAGHMTESNIIGYIGSYPI PEVIRGINSAYIHAKKVNPDVQFKIVWAFTWFDPAKEADAAKVLIEQGADVILQHTDSTAPQAAAQAAGNVITFGQASDM AEYAPKPRVSSIIDNWAPYYIARTKAVMDGTWTSVDTWDGIGPGMVGIGEITDAVPEDVKAEALALKDAIASGEYHPFTG PLKKQDGSVFLAEGETADDGTLAGMNFYVEGIEGTIPE
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38230; Mature: 38230
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLTKLLASAAVALGLAAGGALAEDKTKVGFVYVGPVGDGGWTYEHDQGRKAVVEEFGDA CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH VETVYVENVAEGPDAERVITQMALQGADLIFTTSFGYMDPTINVAKKFPNVKFEHATGYK HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCCCCC RAENVSTYSARFYEGRAVQGVIAGHMTESNIIGYIGSYPIPEVIRGINSAYIHAKKVNPD HHCCCCHHHHEEECCCEEEEEEECCCCCCCEEEECCCCCHHHHHHCCCHHEEEEEECCCC VQFKIVWAFTWFDPAKEADAAKVLIEQGADVILQHTDSTAPQAAAQAAGNVITFGQASDM EEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCCH AEYAPKPRVSSIIDNWAPYYIARTKAVMDGTWTSVDTWDGIGPGMVGIGEITDAVPEDVK HHHCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHCCCCHHH AEALALKDAIASGEYHPFTGPLKKQDGSVFLAEGETADDGTLAGMNFYVEGIEGTIPE HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEECCEEEEECCCCCCCC >Mature Secondary Structure MKLTKLLASAAVALGLAAGGALAEDKTKVGFVYVGPVGDGGWTYEHDQGRKAVVEEFGDA CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH VETVYVENVAEGPDAERVITQMALQGADLIFTTSFGYMDPTINVAKKFPNVKFEHATGYK HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCCCCC RAENVSTYSARFYEGRAVQGVIAGHMTESNIIGYIGSYPIPEVIRGINSAYIHAKKVNPD HHCCCCHHHHEEECCCEEEEEEECCCCCCCEEEECCCCCHHHHHHCCCHHEEEEEECCCC VQFKIVWAFTWFDPAKEADAAKVLIEQGADVILQHTDSTAPQAAAQAAGNVITFGQASDM EEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCEEEECCCCCH AEYAPKPRVSSIIDNWAPYYIARTKAVMDGTWTSVDTWDGIGPGMVGIGEITDAVPEDVK HHHCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHCCCCHHH AEALALKDAIASGEYHPFTGPLKKQDGSVFLAEGETADDGTLAGMNFYVEGIEGTIPE HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEECCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA