Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080308

Identifier: 99080308

GI number: 99080308

Start: 486217

End: 486627

Strand: Reverse

Name: 99080308

Synonym: TM1040_0467

Alternate gene names: NA

Gene position: 486627-486217 (Counterclockwise)

Preceding gene: 99080310

Following gene: 99080307

Centisome position: 15.2

GC content: 58.64

Gene sequence:

>411_bases
ATGAGCATCTTTCACCTCGCCTATCACGTCGATGATCTGGACGCCGCACGCCGCTTTTATGGCGAAACGCTTGGCTGCCG
GGCCGGGCGCAGCACCGACACCTGGATCGACTTCAACTTCTTTGGCCATCAGATCTCGCTGCACAAGGGCGCGCCCTTTG
AAACCGCCAAGACCGGCCGCGTCGGAGAGCATATGGTGCCTATGCCGCATCTCGGTGTGATCCTTCCGCAAGACGAATGG
GTACGCCTTGCAGAGCGGCTGCATGACGCAGGCGTCGAATTCGAAATTCCGCCCACCACCCGGTTCAAAGGAGAACCGGG
CGAGCAAAGCACCATGTTCTTCTACGACCCGGCTGGAAACCCGATCGAGGTCAAAGGCTTTGCCGATATGGACGGAGTGT
TTGCAACATGA

Upstream 100 bases:

>100_bases
AGTTTTCCTTACGATTGAAGATCCAAAAACAAGCTAGCATGTGCATGTCCGGGAGCGCTATGGGTAACATGACCCGCACT
CAAGACGCAGGAGACGCCGC

Downstream 100 bases:

>100_bases
TCAATGCGCTTTTTGCAGCCCGTCCGGAACGGTGGGACACCTATGAGCCAACCCTGCGCGCTGCGTTCGAGGCCGAGGGG
CTCGCAGTCGATCTGCGCCA

Product: glyoxalase/bleomycin resistance protein/dioxygenase

Products: NA

Alternate protein names: Glyoxalase Family Protein; Ring-Cleaving Dioxygenase; Dioxygenase; Extradiol Dioxygenase Family Protein; Dioxygenase/Glyoxalase; Glyoxalase/Extradiol Ring-Cleavage Dioxygenase; Glyoxalase Domain Protein; Glyoxalase/Bleomycin Resistance Family Protein; Dioxygenase Of Extradiol Dioxygenase Family Protein; Glyoxalase/Bleomycin Resistance Protein; Dioxygenase Protein; Glyoxalase; Glyoxalase/Bleomycin Resistance; Extradiol Family Dioxygenase; Lactoylglutathione Lyase Protein; Extradiol Dioxygenase

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPHLGVILPQDEW
VRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT

Sequences:

>Translated_136_residues
MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPHLGVILPQDEW
VRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT
>Mature_135_residues
SIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPHLGVILPQDEWV
RLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT

Specific function: Unknown

COG id: COG3565

COG function: function code R; Predicted dioxygenase of extradiol dioxygenase family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15272; Mature: 15141

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGR
CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC
VGEHMVPMPHLGVILPQDEWVRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGN
CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCC
PIEVKGFADMDGVFAT
EEEEEECCCCCCEECC
>Mature Secondary Structure 
SIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGR
CEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC
VGEHMVPMPHLGVILPQDEWVRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGN
CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCC
PIEVKGFADMDGVFAT
EEEEEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA