| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dcp [H]
Identifier: 99080306
GI number: 99080306
Start: 483198
End: 485213
Strand: Direct
Name: dcp [H]
Synonym: TM1040_0465
Alternate gene names: 99080306
Gene position: 483198-485213 (Clockwise)
Preceding gene: 99080305
Following gene: 99080309
Centisome position: 15.1
GC content: 60.02
Gene sequence:
>2016_bases ATGACAAATCCGCTGCTTCGCGACTGGCAAACGCCCTTTGGGATTGCCCCGTTCGATCAGATTTCCGACGAAGACTTTGC GCCTGCGCTTGATGAGGCGCTAAAGGCGCATACTGCGCAGATCGATGCGATTGCCACCAACCCCGCGCCGCCCACATTCG CCAATGTGATCGAGGCTCTCGAGACGCCATGCCAGCCACTTGAACAGGTGCTGTCGGTGTTTTTCTCGGTGGCCGGGGCG GACAGCAACCCGGCGCGCGAGGCGCTCCAGCGCGCGTTCTCTCCGAATCTTGCGGCGCATTTCTCGGCCATTACTGCCAA TAAGGCACTTTATGCACGGGTGCAGGCGGTGTGGGACCAACGCGACACTCTGGACCTGACCGACGAACAGGCCCGTGTCC TGATGCTCACCCATCGTGGGTTTGTGCGCGGCGGCGCGGCGCTCAATGGCGCGGAAGATACCCGCATGCAGGAGATCAAA TCCCGCCTTGCGACGCTTGGCACCAATTTCACCCAGAACCTGCTTGCGGATGAGCGGGACTGGTTCATGGAGCTCTCCGA GGACGATCTTGAGGGGCTTCCTGATTTTGTTGTGAAGGCCGCACGGACCGCGGGGGCCGAAAAAGGCGTTTCCGGGCCGG TCATTACGCTTGCGCGCTCTATCGTGACGCCTTTCCTGCAGTTCTCGCCGCGCAGGGACCTGCGTGAAAAGGCCTTTCGG GCCTGGGCTGCACGAGGGGCAAATGGCGGCGCACATGACAACCGGGCGATTGCGGCAGAGATCCTGTCGCTGCGTGAAGA ACGGGCCAAGCTCTTGGGCTATAGGAATTTTGCGGCCTACAAGCTGGAAACCGAGATGGCCAAAACGCCGGAGGCGGTGC GTGAGCTGTTGATGGATGTCTGGGGGCCAGCCAAGGCGCAGGCGGACAAGGACGCCGAGGTGTTGACGCGGATGATGCAT GAGGACGGCATCAATGGCGATCTGGCGCCTTGGGATTGGCATTACTACGCAGAAAAACGTCGCAAGATAGAACATGATCT CGACGAAGCCGAACTCAAACCATACCTGCAGCTCGACCGGATGATTGAGGCGGCTTTTGCCTGCGCAAATCGTCTGTTTG GCCTGGAATTCGCACCTCTTGATGTGCCGCTTTATCACAAGGACTGCCGCGCCTGGGAGGTTACGCGGGAAGGCAAGCAT CTGGCGGTGTTTATTGGGGACTATTTCGCGCGGGGATCAAAGCGGTCCGGCGCGTGGTGTTCGGCTATGCGTGCGCAGGC GAAATTCCCCGAGGAACAGACGCCAATCGTGGTCAATGTCTGCAACTTTGCCAAAGGCGACCCGGCGTTGTTGTCCTATG ACGATGCGCGCACGCTGTTCCACGAGTTTGGCCATGCGCTGCACCAGATGCTGTCGAATGTAACCTATGAGAGTGTCTCC GGGACCTCCGTGGCGCGCGATTTTGTGGAACTCCCGAGCCAGCTCTATGAGCATTGGCTGGAGGTGCCCGAGGTACTGCA GGAGTTTGCCACCCATGCAGAGACCGGCGCGCCGATGCCGAAGGAGATGCTCGACAAGGTGCTTGGGGCTGCGACCTTCA ACATGGGGTTCCAGACCGTCGAATATGTGGCGTCCGCATTGGTGGATCTGGAATTTCATGATGGCAGCGCACCCGAGGAT CCGATGGTCAAACAGGCCGAGGTTCTCGCACAGATCGGCATGCCGGCAGCGATTGTCATGCGCCATGCTACGCCGCAGTT TGCGCATGTTTTCTCAGGCGACGGGTACTCCTCGGGCTACTACAGCTATATGTGGTCAGAGGTAATGGACGCCGATGCTT TTGAATCCTTTGAGGAAGCCGGCGGCGCCTTTGATCCTGCACGCGCTGCGGCGCTTGAGGCACACATTCTGTCCAAAGGG GGCTCTGAGGATGCCGCTGAGCTGTATACGGCGTTCCGGGGGCGACTTCCGGGGGTGGACGCGCTTTTGAAAGGGCGTGG GCTGGCCGCCAAGTGA
Upstream 100 bases:
>100_bases CTAGGCAATCCGGGGTCTTAGGCCAGCGAAAACCGAAACACCGCAGACAGATTGCAGGTCCCCGGTGAAGGCGCTAGCGT CGGTGCAAAGGAGACCTCAT
Downstream 100 bases:
>100_bases GCGCCCCTTCTGGGGCGCGGCCCCCGATGGGGAGATTTGGGAAAGATGAAGAGGGGCGCCAAGTTGGGCGCCCTTCGTCG TCAATAGCCGCGGTTCCGGT
Product: peptidyl-dipeptidase Dcp
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 671; Mature: 670
Protein sequence:
>671_residues MTNPLLRDWQTPFGIAPFDQISDEDFAPALDEALKAHTAQIDAIATNPAPPTFANVIEALETPCQPLEQVLSVFFSVAGA DSNPAREALQRAFSPNLAAHFSAITANKALYARVQAVWDQRDTLDLTDEQARVLMLTHRGFVRGGAALNGAEDTRMQEIK SRLATLGTNFTQNLLADERDWFMELSEDDLEGLPDFVVKAARTAGAEKGVSGPVITLARSIVTPFLQFSPRRDLREKAFR AWAARGANGGAHDNRAIAAEILSLREERAKLLGYRNFAAYKLETEMAKTPEAVRELLMDVWGPAKAQADKDAEVLTRMMH EDGINGDLAPWDWHYYAEKRRKIEHDLDEAELKPYLQLDRMIEAAFACANRLFGLEFAPLDVPLYHKDCRAWEVTREGKH LAVFIGDYFARGSKRSGAWCSAMRAQAKFPEEQTPIVVNVCNFAKGDPALLSYDDARTLFHEFGHALHQMLSNVTYESVS GTSVARDFVELPSQLYEHWLEVPEVLQEFATHAETGAPMPKEMLDKVLGAATFNMGFQTVEYVASALVDLEFHDGSAPED PMVKQAEVLAQIGMPAAIVMRHATPQFAHVFSGDGYSSGYYSYMWSEVMDADAFESFEEAGGAFDPARAAALEAHILSKG GSEDAAELYTAFRGRLPGVDALLKGRGLAAK
Sequences:
>Translated_671_residues MTNPLLRDWQTPFGIAPFDQISDEDFAPALDEALKAHTAQIDAIATNPAPPTFANVIEALETPCQPLEQVLSVFFSVAGA DSNPAREALQRAFSPNLAAHFSAITANKALYARVQAVWDQRDTLDLTDEQARVLMLTHRGFVRGGAALNGAEDTRMQEIK SRLATLGTNFTQNLLADERDWFMELSEDDLEGLPDFVVKAARTAGAEKGVSGPVITLARSIVTPFLQFSPRRDLREKAFR AWAARGANGGAHDNRAIAAEILSLREERAKLLGYRNFAAYKLETEMAKTPEAVRELLMDVWGPAKAQADKDAEVLTRMMH EDGINGDLAPWDWHYYAEKRRKIEHDLDEAELKPYLQLDRMIEAAFACANRLFGLEFAPLDVPLYHKDCRAWEVTREGKH LAVFIGDYFARGSKRSGAWCSAMRAQAKFPEEQTPIVVNVCNFAKGDPALLSYDDARTLFHEFGHALHQMLSNVTYESVS GTSVARDFVELPSQLYEHWLEVPEVLQEFATHAETGAPMPKEMLDKVLGAATFNMGFQTVEYVASALVDLEFHDGSAPED PMVKQAEVLAQIGMPAAIVMRHATPQFAHVFSGDGYSSGYYSYMWSEVMDADAFESFEEAGGAFDPARAAALEAHILSKG GSEDAAELYTAFRGRLPGVDALLKGRGLAAK >Mature_670_residues TNPLLRDWQTPFGIAPFDQISDEDFAPALDEALKAHTAQIDAIATNPAPPTFANVIEALETPCQPLEQVLSVFFSVAGAD SNPAREALQRAFSPNLAAHFSAITANKALYARVQAVWDQRDTLDLTDEQARVLMLTHRGFVRGGAALNGAEDTRMQEIKS RLATLGTNFTQNLLADERDWFMELSEDDLEGLPDFVVKAARTAGAEKGVSGPVITLARSIVTPFLQFSPRRDLREKAFRA WAARGANGGAHDNRAIAAEILSLREERAKLLGYRNFAAYKLETEMAKTPEAVRELLMDVWGPAKAQADKDAEVLTRMMHE DGINGDLAPWDWHYYAEKRRKIEHDLDEAELKPYLQLDRMIEAAFACANRLFGLEFAPLDVPLYHKDCRAWEVTREGKHL AVFIGDYFARGSKRSGAWCSAMRAQAKFPEEQTPIVVNVCNFAKGDPALLSYDDARTLFHEFGHALHQMLSNVTYESVSG TSVARDFVELPSQLYEHWLEVPEVLQEFATHAETGAPMPKEMLDKVLGAATFNMGFQTVEYVASALVDLEFHDGSAPEDP MVKQAEVLAQIGMPAAIVMRHATPQFAHVFSGDGYSSGYYSYMWSEVMDADAFESFEEAGGAFDPARAAALEAHILSKGG SEDAAELYTAFRGRLPGVDALLKGRGLAAK
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=582, Percent_Identity=28.6941580756014, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI14149738, Length=575, Percent_Identity=27.304347826087, Blast_Score=201, Evalue=3e-51, Organism=Homo sapiens, GI156105687, Length=670, Percent_Identity=26.2686567164179, Blast_Score=154, Evalue=3e-37, Organism=Escherichia coli, GI1787819, Length=679, Percent_Identity=37.8497790868925, Blast_Score=422, Evalue=1e-119, Organism=Escherichia coli, GI1789913, Length=693, Percent_Identity=34.0548340548341, Blast_Score=354, Evalue=1e-98, Organism=Caenorhabditis elegans, GI32565901, Length=550, Percent_Identity=21.8181818181818, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71999758, Length=469, Percent_Identity=23.0277185501066, Blast_Score=80, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6319793, Length=587, Percent_Identity=25.3833049403748, Blast_Score=177, Evalue=6e-45, Organism=Saccharomyces cerevisiae, GI6322715, Length=454, Percent_Identity=25.7709251101322, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI21356111, Length=493, Percent_Identity=25.9634888438134, Blast_Score=150, Evalue=4e-36, Organism=Drosophila melanogaster, GI20129717, Length=603, Percent_Identity=24.0464344941957, Blast_Score=134, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 74090; Mature: 73959
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNPLLRDWQTPFGIAPFDQISDEDFAPALDEALKAHTAQIDAIATNPAPPTFANVIEAL CCCCCCHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHH ETPCQPLEQVLSVFFSVAGADSNPAREALQRAFSPNLAAHFSAITANKALYARVQAVWDQ HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC RDTLDLTDEQARVLMLTHRGFVRGGAALNGAEDTRMQEIKSRLATLGTNFTQNLLADERD CCCCCCCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHH WFMELSEDDLEGLPDFVVKAARTAGAEKGVSGPVITLARSIVTPFLQFSPRRDLREKAFR HHHHCCCHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH AWAARGANGGAHDNRAIAAEILSLREERAKLLGYRNFAAYKLETEMAKTPEAVRELLMDV HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHCCHHHHHHHHHHH WGPAKAQADKDAEVLTRMMHEDGINGDLAPWDWHYYAEKRRKIEHDLDEAELKPYLQLDR CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHH MIEAAFACANRLFGLEFAPLDVPLYHKDCRAWEVTREGKHLAVFIGDYFARGSKRSGAWC HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHHHCCCCCCCHHH SAMRAQAKFPEEQTPIVVNVCNFAKGDPALLSYDDARTLFHEFGHALHQMLSNVTYESVS HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCHHCCC GTSVARDFVELPSQLYEHWLEVPEVLQEFATHAETGAPMPKEMLDKVLGAATFNMGFQTV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHH EYVASALVDLEFHDGSAPEDPMVKQAEVLAQIGMPAAIVMRHATPQFAHVFSGDGYSSGY HHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCCCCH YSYMWSEVMDADAFESFEEAGGAFDPARAAALEAHILSKGGSEDAAELYTAFRGRLPGVD HHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH ALLKGRGLAAK HHHCCCCCCCC >Mature Secondary Structure TNPLLRDWQTPFGIAPFDQISDEDFAPALDEALKAHTAQIDAIATNPAPPTFANVIEAL CCCCCHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHH ETPCQPLEQVLSVFFSVAGADSNPAREALQRAFSPNLAAHFSAITANKALYARVQAVWDQ HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC RDTLDLTDEQARVLMLTHRGFVRGGAALNGAEDTRMQEIKSRLATLGTNFTQNLLADERD CCCCCCCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCHH WFMELSEDDLEGLPDFVVKAARTAGAEKGVSGPVITLARSIVTPFLQFSPRRDLREKAFR HHHHCCCHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH AWAARGANGGAHDNRAIAAEILSLREERAKLLGYRNFAAYKLETEMAKTPEAVRELLMDV HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHCCHHHHHHHHHHH WGPAKAQADKDAEVLTRMMHEDGINGDLAPWDWHYYAEKRRKIEHDLDEAELKPYLQLDR CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHH MIEAAFACANRLFGLEFAPLDVPLYHKDCRAWEVTREGKHLAVFIGDYFARGSKRSGAWC HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHHHCCCCCCCHHH SAMRAQAKFPEEQTPIVVNVCNFAKGDPALLSYDDARTLFHEFGHALHQMLSNVTYESVS HHHHHHHCCCCCCCCEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCHHCCC GTSVARDFVELPSQLYEHWLEVPEVLQEFATHAETGAPMPKEMLDKVLGAATFNMGFQTV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHH EYVASALVDLEFHDGSAPEDPMVKQAEVLAQIGMPAAIVMRHATPQFAHVFSGDGYSSGY HHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCCCCH YSYMWSEVMDADAFESFEEAGGAFDPARAAALEAHILSKGGSEDAAELYTAFRGRLPGVD HHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH ALLKGRGLAAK HHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537804; 11677609 [H]