| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yedP [C]
Identifier: 99080262
GI number: 99080262
Start: 431975
End: 432754
Strand: Reverse
Name: yedP [C]
Synonym: TM1040_0421
Alternate gene names: 99080262
Gene position: 432754-431975 (Counterclockwise)
Preceding gene: 99080267
Following gene: 99080261
Centisome position: 13.52
GC content: 62.56
Gene sequence:
>780_bases ATGCCCCGGCTGCTTGTTTTTAGTGATCTTGATGGCACCTTGCTGGATCACACGACCTACAGCCATGCCGCCGCTCAACC GGCCTTGTCCGCGCTGCGCAGCCGCGATGCAGTGTTGATCCTGGCAAGCTCCAAGACCGCGGTCGAAATGCTGCCGCTGC ATCAGGAACTCGGGCTGGGAGACGCCCCAATGATCGTCGAGAACGGATCCGCCTGTCAGCGCCCGACAGAGATCGACAGT GACCCGGCCACCTACAACAAACTGCGCAGGCTTCTCACGCGGCTCGAGATGCCCTTTGAAGGCTTTGGCGATATGTCCAC GCAAAAGGTTGCCGCCCTCACGGGCCTCAGCGATGAGGGCGCAGTGCGCGCCAAGACGCGCCAGTTCAGCGAACCCGGCA TCTGGCATGGCACCCCTGCTCAGAAAGACGCGTTCCTTGCCGCACTGGCCCGCGAAGGGGTCACCGCGCGCCAAGGGGGG CGGTTCCTCACGCTCTCTTATGGCGCCACCAAGGCACAGCAGATGCAAAAGATCCGCCAGCAACACGCCCCCTGCTTCAC CGTCGCCCTTGGCGATGCCCCCAATGACGCGGAAATGATCGCCACCGCCGATATTGGCGTCATTGTACGCAACGATCATG GTCCGGATATGCCCGCGATCCCGCCTGAGCACCGGATCATGCACACGCAACAGGAGGGTCCAAAAGGCTGGAACGCGGCC ATGCTGCAGATCCTCAGCGAATGGGACCACGACCACAAAGGAGCCGCAGCGCATGGCTGA
Upstream 100 bases:
>100_bases AGCACGCCCCGCGACCTTTGCCCAGATACCCGGCGCTCCTTAGGCTTGGGGAACAGTTCACGCACGGCCTTGTCGCGCCG TCTTGCAGGAAGGCCCCGTC
Downstream 100 bases:
>100_bases CTTCCACCAGAATGGCAATATCGCCCAATTCCACAACCTGCGCAGCCGCCCGGTCGAGGAGCTGGAGTATGAGCTCACTA CCTTTGCCCAGACCCGCAAG
Product: mannosyl-3-phosphoglycerate phosphatase
Products: NA
Alternate protein names: MPGP [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MPRLLVFSDLDGTLLDHTTYSHAAAQPALSALRSRDAVLILASSKTAVEMLPLHQELGLGDAPMIVENGSACQRPTEIDS DPATYNKLRRLLTRLEMPFEGFGDMSTQKVAALTGLSDEGAVRAKTRQFSEPGIWHGTPAQKDAFLAALAREGVTARQGG RFLTLSYGATKAQQMQKIRQQHAPCFTVALGDAPNDAEMIATADIGVIVRNDHGPDMPAIPPEHRIMHTQQEGPKGWNAA MLQILSEWDHDHKGAAAHG
Sequences:
>Translated_259_residues MPRLLVFSDLDGTLLDHTTYSHAAAQPALSALRSRDAVLILASSKTAVEMLPLHQELGLGDAPMIVENGSACQRPTEIDS DPATYNKLRRLLTRLEMPFEGFGDMSTQKVAALTGLSDEGAVRAKTRQFSEPGIWHGTPAQKDAFLAALAREGVTARQGG RFLTLSYGATKAQQMQKIRQQHAPCFTVALGDAPNDAEMIATADIGVIVRNDHGPDMPAIPPEHRIMHTQQEGPKGWNAA MLQILSEWDHDHKGAAAHG >Mature_258_residues PRLLVFSDLDGTLLDHTTYSHAAAQPALSALRSRDAVLILASSKTAVEMLPLHQELGLGDAPMIVENGSACQRPTEIDSD PATYNKLRRLLTRLEMPFEGFGDMSTQKVAALTGLSDEGAVRAKTRQFSEPGIWHGTPAQKDAFLAALAREGVTARQGGR FLTLSYGATKAQQMQKIRQQHAPCFTVALGDAPNDAEMIATADIGVIVRNDHGPDMPAIPPEHRIMHTQQEGPKGWNAAM LQILSEWDHDHKGAAAHG
Specific function: Unknown
COG id: COG3769
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. MPGP family [H]
Homologues:
Organism=Escherichia coli, GI1788265, Length=263, Percent_Identity=35.361216730038, Blast_Score=123, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR013200 - InterPro: IPR006379 - InterPro: IPR006381 - InterPro: IPR012815 [H]
Pfam domain/function: PF08282 Hydrolase_3 [H]
EC number: =3.1.3.70 [H]
Molecular weight: Translated: 28016; Mature: 27885
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLLVFSDLDGTLLDHTTYSHAAAQPALSALRSRDAVLILASSKTAVEMLPLHQELGLG CCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEHHHCCHHHCCCC DAPMIVENGSACQRPTEIDSDPATYNKLRRLLTRLEMPFEGFGDMSTQKVAALTGLSDEG CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC AVRAKTRQFSEPGIWHGTPAQKDAFLAALAREGVTARQGGRFLTLSYGATKAQQMQKIRQ CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCEEEEECCCHHHHHHHHHHH QHAPCFTVALGDAPNDAEMIATADIGVIVRNDHGPDMPAIPPEHRIMHTQQEGPKGWNAA HCCCEEEEEECCCCCCCEEEEEECEEEEEECCCCCCCCCCCCHHHEEECCCCCCCCHHHH MLQILSEWDHDHKGAAAHG HHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PRLLVFSDLDGTLLDHTTYSHAAAQPALSALRSRDAVLILASSKTAVEMLPLHQELGLG CCEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEHHHCCHHHCCCC DAPMIVENGSACQRPTEIDSDPATYNKLRRLLTRLEMPFEGFGDMSTQKVAALTGLSDEG CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC AVRAKTRQFSEPGIWHGTPAQKDAFLAALAREGVTARQGGRFLTLSYGATKAQQMQKIRQ CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCEEEEECCCHHHHHHHHHHH QHAPCFTVALGDAPNDAEMIATADIGVIVRNDHGPDMPAIPPEHRIMHTQQEGPKGWNAA HCCCEEEEEECCCCCCCEEEEEECEEEEEECCCCCCCCCCCCHHHEEECCCCCCCCHHHH MLQILSEWDHDHKGAAAHG HHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA