| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080214
Identifier: 99080214
GI number: 99080214
Start: 382535
End: 383410
Strand: Reverse
Name: 99080214
Synonym: TM1040_0373
Alternate gene names: NA
Gene position: 383410-382535 (Counterclockwise)
Preceding gene: 99080215
Following gene: 99080208
Centisome position: 11.98
GC content: 62.21
Gene sequence:
>876_bases ATGCGTATTTTCCTCTTGGGGGCCACGGGCTCTATCGGCACTGCCCTCCTGCCCGAACTCTTGGCCGCGGGGCATCATGT CACCGCACTTTGCCGTTCTGACATAGCGGCCAGGACCGTAGATGCGCAGGGTGCCAAAGTGTGTCGCGGCGACATGCGCG CGCCTCAGGATTGGGCCCCTGCGCTTGAGGGCCAGGATGTGGTGATCCATGCCGCCATCACCTTCGATGAAGAGATGGCC GCCGCCGACCGTCAGGTTGTCGACACGCTGATCAACGCGGCCCAGACGCGCGCTGCTGCCCTGCGCGTGATCTATACCGG GGGATGCTGGCTCTACGGTGACACCCGAGGTCGAATTCTACACGAGGCAGACGGGTTTAACCCAATTCCTGCATTTCGCC CCTTTCTGAATCAGGCCGAACGTCTGATGAGGGAGCCCACTCTCTCCACAGCCACACTGCATCCAGCAATGGTGTACCAT CAAGAAGGCGGCGTCTTTGATCGCATGCTTGCAGACATCGCGGCAGAGCGCCCGATTGAACTGTGGGGGAACGCCAGCAT CCGCTGGCCACTGATCCACCGCAAAGATCTCGCGGTTGCCTATCGGTTGCTCGCAGAGGACCCAGACCTCACCGGGCATT TCAACGCGGTTGCCCAATGCGGGGTCGAGATCGGCGCAATCGCCGCAACGCTCGCCCGTGCCCACGGCCATGATGAAACC TTGAATTGCCTCTCTCGCGCCAAGGCTCAGGCACTTGCAGGGCACTGGGCGGAGGGGCCAATGCTCGACCAGAGGCTCAG TGGAGCGCGCCTTCGAGCAGCGACGGGTTGGGTCCCGCAGTATCAAGATCTGGAACAGTGCTTCCCGCCCCTCTGA
Upstream 100 bases:
>100_bases GGATTGCCCCAAAATCATTCCCGTCGCTGAAATACCGCTTGCCCTCAATCATGGTTGAGATCCGACAACATCCCAGAGAC GTTTTACCGGAGACAAAACC
Downstream 100 bases:
>100_bases GCGCCTGAAAGCCACCAAATCCACGTTGGAACAGTCTTATCGAACTCCAGCCCCCGTACTACAAGGGTTCCTCAGCACAG ATAGTGTCCTGGTTCATCTT
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Oxidoreductase; NAD Dependent Epimerase/Dehydratase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Polysaccharide Synthesis Protein; Dyhydroflavanol-4-Reductase; Epimerase/Dehydratase; NAD Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase Dehydratase Protein; Dyhydroflavanol-4-Reductas; Dehydratase; Nucleoside-Diphosphate-Sugar Epimerases; NAD-Dependent Epimerase/Dehydratase Family Protein; UDP-Glucose 4-Epimerase; 3-Beta Hydroxysteroid Dehydrogenase; Nucleoside-Diphosphate-Sugar Epimerase
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIHAAITFDEEMA AADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYH QEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL
Sequences:
>Translated_291_residues MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIHAAITFDEEMA AADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYH QEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL >Mature_291_residues MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIHAAITFDEEMA AADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYH QEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322972, Length=293, Percent_Identity=26.962457337884, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31608; Mature: 31608
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAP CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHCC ALEGQDVVIHAAITFDEEMAAADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRIL CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCEE HEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYHQEGGVFDRMLADIAAERPIE ECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEECCCCHHHHHHHHHHHCCCHH LWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET HCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCHHH LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL HHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAP CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHCC ALEGQDVVIHAAITFDEEMAAADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRIL CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCEE HEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYHQEGGVFDRMLADIAAERPIE ECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEECCCCHHHHHHHHHHHCCCHH LWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET HCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCHHH LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL HHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA