| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080205
Identifier: 99080205
GI number: 99080205
Start: 374058
End: 374852
Strand: Direct
Name: 99080205
Synonym: TM1040_0364
Alternate gene names: NA
Gene position: 374058-374852 (Clockwise)
Preceding gene: 99080204
Following gene: 99080209
Centisome position: 11.69
GC content: 56.98
Gene sequence:
>795_bases ATGACGGATAGCACATTGCCTTCGCCGCAGATTTTTACCTTTCGCGGTCAGCCGGTGATCCGGGATGGCGAACTTGCAGA GCTGTTTTCCTACACAACCGGGAACCTCAACAAGCTGGTGAACAATAATGCCGACCGCTTTGGAGAGGATTTTGCCTTTC GGCTGACTGACGAAGAGTTTGCCGAGTTGAAATTCCAACTTGGAATATCAAAAACGCATGGAGGACTGCGCCATCCTCCG ATGATGTATACCGAGCATGGTGCGGTGATGGCGGCGACGCTGATGCGATCGCCACGCGCAGCAGAGGCCTCGCGGTTTGT GGTCCGCAGCTTTGTGGCTGCGCGGCGTGGTCTGATGGCGAAGGCGCAGGGGCAGAACCTGCCACTATCGCTTCCAGTCA ATGATCTGGTGCCCATCGCCGGGCGCGAGCGTAGCGGTCTCGTCGGAAAGCTGGATGCTGCTCTGGGGCGGGTGCTCGAT GCCATTGCCGATCCGGTGCAGGAAACAACGGTGCGCGATGAGGCGCGCCAGATCGCGCTTGAGGGGCTGTCGGCGATCAA GGCGCATTTGAAAAAGCAGGACATCGCCAATGAAAAGACATTGGCCGAGGTGCAGAAGCTTTTGAAGGAGGCCGAGGCGA TTGATGCCGAGATCTCGGCCCGCCACATTGAGAACAATCATCGCCAGATGGCATATCTTGCCAAGCAGTTGCGGATCGTT ATTGAAGTGCAGCGTTATCTGGATCAGGGCGATGTGGACACGCTGTTAGCTGTGTTAAAGGACCTCGGCACCTGA
Upstream 100 bases:
>100_bases CGCCCTGGCGTGTGTCCGGCCAGTCTCATCTTGATATTCCAACACAGAAGGCCAAGCATTGCAGTCATTCTTTTGACCGA AGCGGAGTTTCAAAACCTCT
Downstream 100 bases:
>100_bases TGCCGGGTCGTCCTGCGGAGCGCCTGCGGCGCGCAGGCTGAGGCGCTGGCGCGCCCGTTGGGCTGGCGGTGCGGGCCGTG CTAACTCTCACCGGACGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTDSTLPSPQIFTFRGQPVIRDGELAELFSYTTGNLNKLVNNNADRFGEDFAFRLTDEEFAELKFQLGISKTHGGLRHPP MMYTEHGAVMAATLMRSPRAAEASRFVVRSFVAARRGLMAKAQGQNLPLSLPVNDLVPIAGRERSGLVGKLDAALGRVLD AIADPVQETTVRDEARQIALEGLSAIKAHLKKQDIANEKTLAEVQKLLKEAEAIDAEISARHIENNHRQMAYLAKQLRIV IEVQRYLDQGDVDTLLAVLKDLGT
Sequences:
>Translated_264_residues MTDSTLPSPQIFTFRGQPVIRDGELAELFSYTTGNLNKLVNNNADRFGEDFAFRLTDEEFAELKFQLGISKTHGGLRHPP MMYTEHGAVMAATLMRSPRAAEASRFVVRSFVAARRGLMAKAQGQNLPLSLPVNDLVPIAGRERSGLVGKLDAALGRVLD AIADPVQETTVRDEARQIALEGLSAIKAHLKKQDIANEKTLAEVQKLLKEAEAIDAEISARHIENNHRQMAYLAKQLRIV IEVQRYLDQGDVDTLLAVLKDLGT >Mature_263_residues TDSTLPSPQIFTFRGQPVIRDGELAELFSYTTGNLNKLVNNNADRFGEDFAFRLTDEEFAELKFQLGISKTHGGLRHPPM MYTEHGAVMAATLMRSPRAAEASRFVVRSFVAARRGLMAKAQGQNLPLSLPVNDLVPIAGRERSGLVGKLDAALGRVLDA IADPVQETTVRDEARQIALEGLSAIKAHLKKQDIANEKTLAEVQKLLKEAEAIDAEISARHIENNHRQMAYLAKQLRIVI EVQRYLDQGDVDTLLAVLKDLGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29142; Mature: 29011
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSTLPSPQIFTFRGQPVIRDGELAELFSYTTGNLNKLVNNNADRFGEDFAFRLTDEEF CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHCCCCEEEECHHHH AELKFQLGISKTHGGLRHPPMMYTEHGAVMAATLMRSPRAAEASRFVVRSFVAARRGLMA HHHHHHHCCHHCCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KAQGQNLPLSLPVNDLVPIAGRERSGLVGKLDAALGRVLDAIADPVQETTVRDEARQIAL HCCCCCCCEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGLSAIKAHLKKQDIANEKTLAEVQKLLKEAEAIDAEISARHIENNHRQMAYLAKQLRIV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEVQRYLDQGDVDTLLAVLKDLGT HHHHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure TDSTLPSPQIFTFRGQPVIRDGELAELFSYTTGNLNKLVNNNADRFGEDFAFRLTDEEF CCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHCCCCEEEECHHHH AELKFQLGISKTHGGLRHPPMMYTEHGAVMAATLMRSPRAAEASRFVVRSFVAARRGLMA HHHHHHHCCHHCCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KAQGQNLPLSLPVNDLVPIAGRERSGLVGKLDAALGRVLDAIADPVQETTVRDEARQIAL HCCCCCCCEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EGLSAIKAHLKKQDIANEKTLAEVQKLLKEAEAIDAEISARHIENNHRQMAYLAKQLRIV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEVQRYLDQGDVDTLLAVLKDLGT HHHHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA