| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080175
Identifier: 99080175
GI number: 99080175
Start: 338687
End: 339277
Strand: Direct
Name: 99080175
Synonym: TM1040_0334
Alternate gene names: NA
Gene position: 338687-339277 (Clockwise)
Preceding gene: 99080174
Following gene: 99080178
Centisome position: 10.58
GC content: 59.56
Gene sequence:
>591_bases ATGAAGCCGGATATCGACAGCCTGAACCGCGAGACCATCGTAGCGTTTATCGGGTCGATTTTTGATCGCCGCGGGGACGA GGAATATCTGGGCGAGCCTGTGACGATGGGTGAACATATGTTGCAGGGCGCCACAATCGCAGAGCGCAACGGCCAGCCCG AAGAGATCATCGTCGGCGCGCTGCTGCATGATATCGGACATTTCACCAGTGAATTTGGCACGTTCACGATGGATGACACC GAGGATCGCCATCACGAGGATGCGGGCGCCGAGGTGCTGGAGCGGTTCTTCCCGTCAGTTGTCACAGACTGCTGCCGCTA CCATGTGGCGGCCAAGCGGTATCTCTGTGCCACCCGGCCCGAGTATTTCAAGCGCCTCTCAGACGCTTCGGTCCACTCTT TGAACCTCCAAGGGGGTCCGATGTCACCAGAAGAGGTGAGCGCCTTCGAGCAGAACCCGAACCTCAAGCAGATCATCGCG GTGCGTTACCTCGACGAGGCGGGCAAGGTCGCCGGGATGGAGACACCCGACTTCTGGCATTTTGCCCCCATGGTGCAGCG GATGGTCGATCGGCATCTGTCTGCGGTCTGA
Upstream 100 bases:
>100_bases GCGAGGGGACACGCTGGCTGCAAGGGTGCTACGCCGACAAGGACGGGCTGCGCTCCGCCTATCATGCGATGATGCGGGAT GCGCGCGTGGAGGCTGCGGA
Downstream 100 bases:
>100_bases TCGCGCGCGATAGGCCCAGACAGAGCGTCGGTGGGCCGAGCACCGATTGAACGGTGGATCGCGCCCGGGCGCTTCTGGAG CGGGCGAAGGTCACCCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MKPDIDSLNRETIVAFIGSIFDRRGDEEYLGEPVTMGEHMLQGATIAERNGQPEEIIVGALLHDIGHFTSEFGTFTMDDT EDRHHEDAGAEVLERFFPSVVTDCCRYHVAAKRYLCATRPEYFKRLSDASVHSLNLQGGPMSPEEVSAFEQNPNLKQIIA VRYLDEAGKVAGMETPDFWHFAPMVQRMVDRHLSAV
Sequences:
>Translated_196_residues MKPDIDSLNRETIVAFIGSIFDRRGDEEYLGEPVTMGEHMLQGATIAERNGQPEEIIVGALLHDIGHFTSEFGTFTMDDT EDRHHEDAGAEVLERFFPSVVTDCCRYHVAAKRYLCATRPEYFKRLSDASVHSLNLQGGPMSPEEVSAFEQNPNLKQIIA VRYLDEAGKVAGMETPDFWHFAPMVQRMVDRHLSAV >Mature_196_residues MKPDIDSLNRETIVAFIGSIFDRRGDEEYLGEPVTMGEHMLQGATIAERNGQPEEIIVGALLHDIGHFTSEFGTFTMDDT EDRHHEDAGAEVLERFFPSVVTDCCRYHVAAKRYLCATRPEYFKRLSDASVHSLNLQGGPMSPEEVSAFEQNPNLKQIIA VRYLDEAGKVAGMETPDFWHFAPMVQRMVDRHLSAV
Specific function: Unknown
COG id: COG4341
COG function: function code R; Predicted HD phosphohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22087; Mature: 22087
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPDIDSLNRETIVAFIGSIFDRRGDEEYLGEPVTMGEHMLQGATIAERNGQPEEIIVGA CCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCHHHCCCCCHHHHHHHH LLHDIGHFTSEFGTFTMDDTEDRHHEDAGAEVLERFFPSVVTDCCRYHVAAKRYLCATRP HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH EYFKRLSDASVHSLNLQGGPMSPEEVSAFEQNPNLKQIIAVRYLDEAGKVAGMETPDFWH HHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH FAPMVQRMVDRHLSAV HHHHHHHHHHHHHHCC >Mature Secondary Structure MKPDIDSLNRETIVAFIGSIFDRRGDEEYLGEPVTMGEHMLQGATIAERNGQPEEIIVGA CCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCHHHCCCCCHHHHHHHH LLHDIGHFTSEFGTFTMDDTEDRHHEDAGAEVLERFFPSVVTDCCRYHVAAKRYLCATRP HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH EYFKRLSDASVHSLNLQGGPMSPEEVSAFEQNPNLKQIIAVRYLDEAGKVAGMETPDFWH HHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH FAPMVQRMVDRHLSAV HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA