| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080102
Identifier: 99080102
GI number: 99080102
Start: 274857
End: 275486
Strand: Reverse
Name: 99080102
Synonym: TM1040_0261
Alternate gene names: NA
Gene position: 275486-274857 (Counterclockwise)
Preceding gene: 99080123
Following gene: 99080079
Centisome position: 8.61
GC content: 60.16
Gene sequence:
>630_bases ATGACAAAGGCCATCGGCATGGAAGCGTCTGAGACCCGTGAACCCCGGATTGAGCGGCCAAAGCTGACCTTTGCGCCGGA GGTCTGCGACTGGGTCGAGGGTCATTACAAGGATGCAGACGTCATTCTGGAGTATGGCAGCGGCGGATCCACCGTGCTCG GCGCCGAGATGCCCGGCAAAACGCTCTACTCTGTCGAGAGCAGCCGCGACTGGCACAAGATGATGCAGCGCTACTTTGAC GAAAACGATGTCCCCTCTCTGCCGCATCTGCACTACGTCAACATCGGCAAGACCGGGAAGTGGGGCCTGCCGGTGAACAC CGAGCAGCACCACCGCTATCACAAATACCCGCTCTCGATCTGGGATATCGACGGCTTTCAGCACCCGGATCTGATCCTGA TTGACGGCCGGTTTCGGGTCGCCTGCGCCCTGGCTGCGATGCTGCGCTGCACCCGGAAGGTCACGATCCTCTTTGATGAC TACCGCGACCGCAAACGCTATCGCGTGCTCGAGGAGTTTCTCGAGCTGAAAGAAATGCGCGGCTACATGGCCCGCTTTGA GGTCGAACCAACCGCCCTGCCCCGCGAAAAGATGACCCGGATCATCGGCCTCTTTGCACGCGCCTTGTGA
Upstream 100 bases:
>100_bases TTGTCCGGTGGGCAGCAGGGCGTCGCAAACCAGAGCCACATATTTGCGCAGGCTTGACTTTGTCCTAACCAGCCCACACC ACAAACCCATAAGGTGATTT
Downstream 100 bases:
>100_bases CGCTTCAGCAGCCTAGATGATCTCATCCTCGTCAAACATCGCCGCGCCATCAAGCTGCGCGTTGAGCGTTTCGATCTGTT GTTCGGCGGTGGCGGAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRDWHKMMQRYFD ENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDD YRDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL
Sequences:
>Translated_209_residues MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRDWHKMMQRYFD ENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDD YRDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL >Mature_208_residues TKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRDWHKMMQRYFDE NDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDDY RDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24396; Mature: 24265
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGK CCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCC TLYSVESSRDWHKMMQRYFDENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSI EEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCEECCCCEE WDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDDYRDRKRYRVLEEFLELKEMR EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHH GYMARFEVEPTALPREKMTRIIGLFARAL HHHHHEECCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure TKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGK CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCC TLYSVESSRDWHKMMQRYFDENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSI EEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCEECCCCEE WDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDDYRDRKRYRVLEEFLELKEMR EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHH GYMARFEVEPTALPREKMTRIIGLFARAL HHHHHEECCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA