Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080091

Identifier: 99080091

GI number: 99080091

Start: 267658

End: 268230

Strand: Direct

Name: 99080091

Synonym: TM1040_0250

Alternate gene names: NA

Gene position: 267658-268230 (Clockwise)

Preceding gene: 99080090

Following gene: 99080092

Centisome position: 8.36

GC content: 53.93

Gene sequence:

>573_bases
ATGTTCATCCAGCCGGATTGGTTTGATCCGACCCAGCCAGGGGTGGGGACGAATAGGTATTCTTATTCGAATAACGATCC
AGTCAACTTACTCGATCCTTCTGGGAATCAAGCTGTTTCTGCCTTCACGCAGTCGCAGGAAGAACGTGACAGTGCCTACC
GCGATACGGCTGACATGTACGATCGGCGCGCTGACGAGTTGGTAGCGGATGGCGCGCCGGACGATGATCTTGAGGTGTTG
GAGTATCGCCAGAAGGCAAAGGATCAGCGCAGTCGAATTGGCGTATCCGGCACTCAGTTGGTAGTTGAGGATGTGGCGTC
TGTTGCGGTGCCGTATGCTGCCGGGAAAGCTGCCGGGCTTCTCAGTCGCCTTTTCGGTGGCGCGGCGAAATCATCTACAT
CCGCTACAGCACCTGAGCTATCGACGGAGATTGCTTCGACCTTCCGTAGTTCAAAATACTCAACTGTTGTCGTAGAGGAG
CCAACAACCCTATATCGAGTATACGGGGGTAGTGCGCGAATGATTGGCGGTTTTTGGACGAGGACAAAACCTCAAGGGCC
ACTACAGTCCTAA

Upstream 100 bases:

>100_bases
CCCCGACACTATCAGGCGCGCTGAAGAACGTTAGGCCCTTGGGCTGCAAACGCTGCTGTTTTCCGTCTTCCTCGCCACCG
TTGCCGGGCAGGCCACGGCG

Downstream 100 bases:

>100_bases
TTGGATAGTGCGTTGGCGCCACAATGGGGAAATACTGCGGAAAAAGTCGTGACAATGACCGTTCCAAGAGGAACCGTAAT
TTATGAGGGGGTCGCCGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVADGAPDDDLEVL
EYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEE
PTTLYRVYGGSARMIGGFWTRTKPQGPLQS

Sequences:

>Translated_190_residues
MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVADGAPDDDLEVL
EYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEE
PTTLYRVYGGSARMIGGFWTRTKPQGPLQS
>Mature_190_residues
MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVADGAPDDDLEVL
EYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEE
PTTLYRVYGGSARMIGGFWTRTKPQGPLQS

Specific function: Unknown

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20605; Mature: 20605

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DRRADELVADGAPDDDLEVLEYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCHHHHH
LSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEEPTTLYRVYGGSARMIGGFWT
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEECCEEC
RTKPQGPLQS
CCCCCCCCCC
>Mature Secondary Structure
MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DRRADELVADGAPDDDLEVLEYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCHHHHH
LSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEEPTTLYRVYGGSARMIGGFWT
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEECCEEC
RTKPQGPLQS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA