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The map label for this gene is ydcM [C]

Identifier: 94986371

GI number: 94986371

Start: 2395236

End: 2396411

Strand: Reverse

Name: ydcM [C]

Synonym: Dgeo_2272

Alternate gene names: 94986371

Gene position: 2396411-2395236 (Counterclockwise)

Preceding gene: 94986372

Following gene: 94986367

Centisome position: 97.13

GC content: 61.31

Gene sequence:

>1176_bases
ATGACGACGCACCGCAAGGTCTACAGGTATCGGATTGAGCCGACCCCGGTTCAAGAGTCGAAGCTGTACATGCTGGCGGG
AAGTCGGCGCTTCGTCTTCAACTGGGCTCTTGCGCGTCGAAGGGAACACTACGCCGAAACGGGCAAGACCCTGGGGTACA
ACGCTCAGGCGGGAGAGTTGACGGCCCTGAAGAACCAGGAGGAAACCTCCTGGCTGAAGGAATCGGACAGCCAGCTTCTC
CAGCAGGCCCTCAAGGACGTGGAGCGGGCCTTCGTCAACTTCTTTGAGAAGCGGGCGAGGTTCCCCCGGTTCAAGAGCAA
AAAGACGGATACTCCGCGCTTCCGTATTCCCCAGCGGGTGCGGATAGAGGGGAGCCGTGTGTATGTCCCGAAGGTGGGAT
GGGTTAAGCTCCGCAAGTCTCAGGAGATAGAGGGCAAGACCAAGAGCGCGACGTTCAAGCGGGAGGCAGACGGTCACTGG
TACGTCTTGCTCGTCTCCGAGTTTGAGATGCCCGATGTACCGCTGCCCCCCGTCCCTGAGTCCGAGGTGGTCGGGATTGA
CCTCGGCCTGAAGGATTTCTACGTGTTGTCCGACGGCGGGCGGAAAGAGGCCCCGAGGTTTGCCCGCAAGGGGCAGCGGA
AACTCCGCCGCGCTGCCCGTCGTCACTCCAAATGCACCAGGGGGAGCAACCGCAAGGCGAAGGCCAAGCGGAAGCTCGCC
CGTGTTCACCGCCAGATTGCGAATCAGAGAAAGGACTTCGTTCACAAGGCCACCTCCGGTCTTGTTCAGCAGTACCAGGG
TTTCTGCATCGAGAACTTGAGCATCAAGGGGATGGCGAAAACCAAGCTGTCCAAGAGCGTTCTCGACGCCGCCCTGGGAG
AGTTTCGCCGCCAGCTCGCCTACAAGGCCCAGTGGCACCGGAAGTGGCTGGCGGTCATAGACCGCTGGTTTCCGTCCAGC
AAGCTGTGTGGGGAATGCGGCAGCATCAACGCAGACCTGACCCTGAGTGACCGGGAATGGACGTGCGAATGTGGAGCGGT
TCACGACCGCGACCTCAACGCCGCCCGGAACATCAAGCGGGAAGGGCTTTCGCAAATCGTCGTCGCGGGGCACGCGGAGA
CGTTAAACGCTCGGGGAGAGGGTGTCAGACCTGCGATAGCGGGCAGCCCTCGATGA

Upstream 100 bases:

>100_bases
CCCCGCCCTGTGGACCCGGAGCTACTTCGTGTCCACGGCTGGGGCGGTGAGTGGGGCCACCATCCAAAAGTACATCGCCG
CTCAGAAGACGAGGGACTGA

Downstream 100 bases:

>100_bases
AGCGAGAATCCAACGGCTTTAGCCGTTGGAGTGTCAAGTGTTGGAGTCACCTGCGGTGAGAAAAGTTCCCAGCTCTCCCT
CGTCCACGGTCTGAATTCCA

Product: putative transposase, IS891/IS1136/IS1341

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MTTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGELTALKNQEETSWLKESDSQLL
QQALKDVERAFVNFFEKRARFPRFKSKKTDTPRFRIPQRVRIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHW
YVLLVSEFEMPDVPLPPVPESEVVGIDLGLKDFYVLSDGGRKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLA
RVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLAYKAQWHRKWLAVIDRWFPSS
KLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKREGLSQIVVAGHAETLNARGEGVRPAIAGSPR

Sequences:

>Translated_391_residues
MTTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGELTALKNQEETSWLKESDSQLL
QQALKDVERAFVNFFEKRARFPRFKSKKTDTPRFRIPQRVRIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHW
YVLLVSEFEMPDVPLPPVPESEVVGIDLGLKDFYVLSDGGRKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLA
RVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLAYKAQWHRKWLAVIDRWFPSS
KLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKREGLSQIVVAGHAETLNARGEGVRPAIAGSPR
>Mature_390_residues
TTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGELTALKNQEETSWLKESDSQLLQ
QALKDVERAFVNFFEKRARFPRFKSKKTDTPRFRIPQRVRIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHWY
VLLVSEFEMPDVPLPPVPESEVVGIDLGLKDFYVLSDGGRKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLAR
VHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLAYKAQWHRKWLAVIDRWFPSSK
LCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKREGLSQIVVAGHAETLNARGEGVRPAIAGSPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=367, Percent_Identity=38.6920980926431, Blast_Score=233, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44854; Mature: 44723

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGEL
CCCCCEEEEEECCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCE
TALKNQEETSWLKESDSQLLQQALKDVERAFVNFFEKRARFPRFKSKKTDTPRFRIPQRV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
RIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHWYVLLVSEFEMPDVPLPPVPE
EECCCEEEECCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCC
SEVVGIDLGLKDFYVLSDGGRKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLA
CCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YKAQWHRKWLAVIDRWFPSSKLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKR
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHH
EGLSQIVVAGHAETLNARGEGVRPAIAGSPR
HHHHHEEHCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGEL
CCCCEEEEEECCCCCCCCCEEEEEECCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCE
TALKNQEETSWLKESDSQLLQQALKDVERAFVNFFEKRARFPRFKSKKTDTPRFRIPQRV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
RIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHWYVLLVSEFEMPDVPLPPVPE
EECCCEEEECCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCC
SEVVGIDLGLKDFYVLSDGGRKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLA
CCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YKAQWHRKWLAVIDRWFPSSKLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKR
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCCCCEEECCCCCCCCCHHHHHHHH
EGLSQIVVAGHAETLNARGEGVRPAIAGSPR
HHHHHEEHCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]