Click here to switch to the map view.

The map label for this gene is tnpA1 [H]

Identifier: 94986372

GI number: 94986372

Start: 2396412

End: 2396810

Strand: Reverse

Name: tnpA1 [H]

Synonym: Dgeo_2273

Alternate gene names: 94986372

Gene position: 2396810-2396412 (Counterclockwise)

Preceding gene: 94986376

Following gene: 94986371

Centisome position: 97.15

GC content: 62.41

Gene sequence:

>399_bases
GTGGCTGACCAGTACAAACACGCCAACACCACGGTGTATCTGCTGAACTACCACTTCGTGTTCATCCCGAAGCGGCGGCG
GAAGGTGCTGGTCGGCCCGGTCGAGACGCGCCTGAAGGAAGTGCTGGCGGAGAAGTGTGCGGAGATGAAGTGGGACATTC
TCGCCCTTGAGGTGATGCCTGACCACGTTCACCTGTTCCTTGCCGCCGACCCCGCCACCGCGCCCAATCAGGTGATGCAC
TTGCTGAAGGGCTACACGTCGCGGATTCTCCGGCAGGAGTTCCCGCACCTGAACACGCTCCCCGCCCTGTGGACCCGGAG
CTACTTCGTGTCCACGGCTGGGGCGGTGAGTGGGGCCACCATCCAAAAGTACATCGCCGCTCAGAAGACGAGGGACTGA

Upstream 100 bases:

>100_bases
TGCAGAGTCCCAGCCGGCCGTCAGGGCGGGCAGGGCTGAGGCTGTTGCGCCGTGTTAGTAGGGGCTTGCGACAAACGCCG
AGCCGTGTCAGTCTCTCTTC

Downstream 100 bases:

>100_bases
ATGACGACGCACCGCAAGGTCTACAGGTATCGGATTGAGCCGACCCCGGTTCAAGAGTCGAAGCTGTACATGCTGGCGGG
AAGTCGGCGCTTCGTCTTCA

Product: transposase IS200-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMPDHVHLFLAADPATAPNQVMH
LLKGYTSRILRQEFPHLNTLPALWTRSYFVSTAGAVSGATIQKYIAAQKTRD

Sequences:

>Translated_132_residues
MADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMPDHVHLFLAADPATAPNQVMH
LLKGYTSRILRQEFPHLNTLPALWTRSYFVSTAGAVSGATIQKYIAAQKTRD
>Mature_131_residues
ADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMPDHVHLFLAADPATAPNQVMHL
LKGYTSRILRQEFPHLNTLPALWTRSYFVSTAGAVSGATIQKYIAAQKTRD

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 15094; Mature: 14963

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMP
CCCCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECC
DHVHLFLAADPATAPNQVMHLLKGYTSRILRQEFPHLNTLPALWTRSYFVSTAGAVSGAT
CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHH
IQKYIAAQKTRD
HHHHHHHHCCCC
>Mature Secondary Structure 
ADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMP
CCCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECC
DHVHLFLAADPATAPNQVMHLLKGYTSRILRQEFPHLNTLPALWTRSYFVSTAGAVSGAT
CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHH
IQKYIAAQKTRD
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]