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The map label for this gene is ideR [H]

Identifier: 94986367

GI number: 94986367

Start: 2392709

End: 2393374

Strand: Reverse

Name: ideR [H]

Synonym: Dgeo_2268

Alternate gene names: 94986367

Gene position: 2393374-2392709 (Counterclockwise)

Preceding gene: 94986371

Following gene: 94986366

Centisome position: 97.01

GC content: 70.12

Gene sequence:

>666_bases
ATGACCGCCCGCCCCCTTTCCCCCTCGGCTGAGGACTACCTCAAGCACCTCTACGTGCTGGGGCAGGCCGGCAAGGTGAC
GACCCAGGCACTGGCTGACGCGCTTGGGGTGGTGCCTGCGAGTGCCACCGGCATGCTGCGCAAGCTGACGGAGCAGGGTC
TGGTGGCCCACGCTCCTTACCAAGGCGCACAGCTCACGGCAGAGGGTCAGCGGGTTGCACTGGAGGTGTTGCGGCATCAC
CGCTTGCTTGAACTCTTCCTGCACCGCGCCCTGGGGGTGCCGCTCGACGAGGTGCATGAGGAGGCTGAGCAGCTCGAGCA
TGCCCTTTCCGAACGGCTGGAGGCCCGAATTGCTGCCTGGTTGGGCGACCCCACCCACGACCCACACGGCGACCCGATTC
CCACCCTTGCGGGTGAGGTGCCCGCCCGCGCCGAACGCCGCCTCACACAACTCGCGCCGGGCGAGGGCGCGACCATCGCC
CGCATTCCCGACAATGACCCGGCGGGATTGCGGGCCTTGGTCGCGGCGGGCCTCACGCCGGGCGTTGCGGTCAAGCTGCA
ACAGGTGGACGTGCCCCTGGGCACCCTAACCGTGACGCTGCCCGGCGGCGGCCCCCTCACCCTCGCGCTGGGGGTGGCCG
CCCAGGTGCAGGTGCATGGCGGCTAA

Upstream 100 bases:

>100_bases
AGCTATAGGAGACACACAGACGCCCAAAAGTTCCCGGTCCTGTGGCGTTCCTGCGGTTTGTCCCTTGGACTTTCATTTTA
GCCTCGCCTAAACTGCTTCC

Downstream 100 bases:

>100_bases
AGCGCTGGGACAGGAGCTGGGGCAGGCTGACTCGCTGGGGGAGCCGGACAGCTGCGCGACAATGCCGGTATGACGGACCG
CGAACTGAATTTTGCCCGCA

Product: DtxR family iron dependent repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTARPLSPSAEDYLKHLYVLGQAGKVTTQALADALGVVPASATGMLRKLTEQGLVAHAPYQGAQLTAEGQRVALEVLRHH
RLLELFLHRALGVPLDEVHEEAEQLEHALSERLEARIAAWLGDPTHDPHGDPIPTLAGEVPARAERRLTQLAPGEGATIA
RIPDNDPAGLRALVAAGLTPGVAVKLQQVDVPLGTLTVTLPGGGPLTLALGVAAQVQVHGG

Sequences:

>Translated_221_residues
MTARPLSPSAEDYLKHLYVLGQAGKVTTQALADALGVVPASATGMLRKLTEQGLVAHAPYQGAQLTAEGQRVALEVLRHH
RLLELFLHRALGVPLDEVHEEAEQLEHALSERLEARIAAWLGDPTHDPHGDPIPTLAGEVPARAERRLTQLAPGEGATIA
RIPDNDPAGLRALVAAGLTPGVAVKLQQVDVPLGTLTVTLPGGGPLTLALGVAAQVQVHGG
>Mature_220_residues
TARPLSPSAEDYLKHLYVLGQAGKVTTQALADALGVVPASATGMLRKLTEQGLVAHAPYQGAQLTAEGQRVALEVLRHHR
LLELFLHRALGVPLDEVHEEAEQLEHALSERLEARIAAWLGDPTHDPHGDPIPTLAGEVPARAERRLTQLAPGEGATIAR
IPDNDPAGLRALVAAGLTPGVAVKLQQVDVPLGTLTVTLPGGGPLTLALGVAAQVQVHGG

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 23113; Mature: 22982

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARPLSPSAEDYLKHLYVLGQAGKVTTQALADALGVVPASATGMLRKLTEQGLVAHAPY
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
QGAQLTAEGQRVALEVLRHHRLLELFLHRALGVPLDEVHEEAEQLEHALSERLEARIAAW
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDPTHDPHGDPIPTLAGEVPARAERRLTQLAPGEGATIARIPDNDPAGLRALVAAGLTP
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCC
GVAVKLQQVDVPLGTLTVTLPGGGPLTLALGVAAQVQVHGG
CCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCC
>Mature Secondary Structure 
TARPLSPSAEDYLKHLYVLGQAGKVTTQALADALGVVPASATGMLRKLTEQGLVAHAPY
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
QGAQLTAEGQRVALEVLRHHRLLELFLHRALGVPLDEVHEEAEQLEHALSERLEARIAAW
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDPTHDPHGDPIPTLAGEVPARAERRLTQLAPGEGATIARIPDNDPAGLRALVAAGLTP
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCC
GVAVKLQQVDVPLGTLTVTLPGGGPLTLALGVAAQVQVHGG
CCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]