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The map label for this gene is ligT

Identifier: 94314833

GI number: 94314833

Start: 115839

End: 116405

Strand: Direct

Name: ligT

Synonym: Rmet_5914

Alternate gene names: NA

Gene position: 115839-116405 (Clockwise)

Preceding gene: 94314832

Following gene: 94314835

Centisome position: 4.49

GC content: 69.49

Gene sequence:

>567_bases
GTGGCGCGTCTGTTCGTCGCCATCCAGCCTCCCGCCGCGCTGGTGGCCGACCTGCTGCGCATCGTTCCCGCACAGCACGG
CATTCGGCCGACGATGGCCGCGCAGTTGCACCTGACCCTGCGCTTTCTGGGCGAGCAGGATGACCCCACGGCGGTGCGGA
TTGAACGGGTGTTGTCCGAGGTAGCTGCGCCGTCCGTGGTGTTGCAGGTGAAGGGTGTCGGCCGCTTTCGTGGCCGCCAG
GGCGCCATACTCTGGGCCGGGCTGGAGGCGTCGGCGCCGATGCAGGCGTTGGTCGACGCCATCACCGCCGCGCTGGAGCG
CGAAGGGATTCCACCCGAGCGCCGCCGCTTCTGGCCACATTTGACCCTGGCACGTTGCCGGCCTGAGGTGCCGGAGCATG
TACTGCGGGACTGGCTGGCGGCCCGTCGGGCACTGTCGCTGCCTGCCTGCACGATCGACCGGTTCGTCCTGTTCGAGAGC
GTGCTTGACCGACAGGGCGCGCGGCATGTGGCGCGGGCCGTCTATCCACTTGTCGCGAACGGTCCAGACCGCTGCCCCCA
ACGCTGA

Upstream 100 bases:

>100_bases
CGCTGCTGACGCTGGAGGGCGTGCTTTATCCGGGCCAGTTGCAAGCCACGGCGCTGGGTCAGGCCGCCCTTGCCCTGGAC
TGACGAAGGCGGGAGCGCGC

Downstream 100 bases:

>100_bases
CACCTGTCACGCCGTGCCGCTCGGCCGGTGATCGCCCGGACAGCCGCTCTGAGTGTTGGCTTCAGATCTGCCATGTAACG
GCTGTAACGCATGTTGCATG

Product: 2',5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; ABC Transporter; 2 5 RNA Ligase

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MARLFVAIQPPAALVADLLRIVPAQHGIRPTMAAQLHLTLRFLGEQDDPTAVRIERVLSEVAAPSVVLQVKGVGRFRGRQ
GAILWAGLEASAPMQALVDAITAALEREGIPPERRRFWPHLTLARCRPEVPEHVLRDWLAARRALSLPACTIDRFVLFES
VLDRQGARHVARAVYPLVANGPDRCPQR

Sequences:

>Translated_188_residues
MARLFVAIQPPAALVADLLRIVPAQHGIRPTMAAQLHLTLRFLGEQDDPTAVRIERVLSEVAAPSVVLQVKGVGRFRGRQ
GAILWAGLEASAPMQALVDAITAALEREGIPPERRRFWPHLTLARCRPEVPEHVLRDWLAARRALSLPACTIDRFVLFES
VLDRQGARHVARAVYPLVANGPDRCPQR
>Mature_187_residues
ARLFVAIQPPAALVADLLRIVPAQHGIRPTMAAQLHLTLRFLGEQDDPTAVRIERVLSEVAAPSVVLQVKGVGRFRGRQG
AILWAGLEASAPMQALVDAITAALEREGIPPERRRFWPHLTLARCRPEVPEHVLRDWLAARRALSLPACTIDRFVLFESV
LDRQGARHVARAVYPLVANGPDRCPQR

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20817; Mature: 20685

Theoretical pI: Translated: 11.27; Mature: 11.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLFVAIQPPAALVADLLRIVPAQHGIRPTMAAQLHLTLRFLGEQDDPTAVRIERVLSE
CCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VAAPSVVLQVKGVGRFRGRQGAILWAGLEASAPMQALVDAITAALEREGIPPERRRFWPH
HCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCC
LTLARCRPEVPEHVLRDWLAARRALSLPACTIDRFVLFESVLDRQGARHVARAVYPLVAN
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
GPDRCPQR
CCCCCCCC
>Mature Secondary Structure 
ARLFVAIQPPAALVADLLRIVPAQHGIRPTMAAQLHLTLRFLGEQDDPTAVRIERVLSE
CEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VAAPSVVLQVKGVGRFRGRQGAILWAGLEASAPMQALVDAITAALEREGIPPERRRFWPH
HCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCC
LTLARCRPEVPEHVLRDWLAARRALSLPACTIDRFVLFESVLDRQGARHVARAVYPLVAN
HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
GPDRCPQR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA