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The map label for this gene is ybdA [C]

Identifier: 94314724

GI number: 94314724

Start: 2564425

End: 2565684

Strand: Reverse

Name: ybdA [C]

Synonym: Rmet_5805

Alternate gene names: 94314724

Gene position: 2565684-2564425 (Counterclockwise)

Preceding gene: 94314727

Following gene: 94314723

Centisome position: 99.44

GC content: 65.79

Gene sequence:

>1260_bases
ATGTCCACCGCCCCCGCGCAAGCGGCTGACGAGCCGCAAACCGTTTTTCGTGATCCTGCTTTCCGGCATTTCTGGTTCGC
CCGGCTTTGCACCACCATCGCCTATCAAATCTTCACTGTCGCCGTCGGCTGGCAGATGTATGACCTGACGCGCGATCCGT
TCATGCTCGGCATGGTCGGGCTGGTGCAGTTTCTGCCGTCGATCGTCCTGCTGCTGATGTCGGGTCATGTGGCGGACCGG
TTCGATCGCCGCATCGTGGTGCGTACCTGTCAGGTGCTGGAAGCGCTGATCGCGGCATTGATGGCCGCGGCGAGTTTCTC
GGGCTGGGTCACGAGCGAGCACATCTTCCTGTTCGTTGCAGCGATCGGCGGATGCCGCGCCTTTGAAACCCCCACGCTCC
AGGCATTGCTGCCCAGCGTGGTGACGTCACGCCAGTTGCCGCGCGCCGTGGCGTTGTCGAGTTCGGCGGGGCAGACCGCG
ATCATCATCGGGCCGGCGCTGGGTGGCTTTGCCTACGTAGCGGGGCCCGGTGTGGTCTATTCGATCAGCGCCGCGCTGTT
CGCGATTGCCGCGATCCTGGTCACAACGCTGAAGCTCCGGCAGGCCGCGCAGCGGATGACCGCGCAGGCCAGCCTCAAGA
CCCTGTTCGCCGGATTTGCCTATATCCGAAGCCATCAGGTGCTGCTGGGCGCGGTGTCGCTGGACCTGTTCGCGGTGCTG
CTCGGCGGCGCCACGGCGCTGCTGCCGATCTACGCGCGCGACATCCTGCATACCGGTCCGTGGGGTCTTGGCCTGCTGCG
CTCGGCGCCCGCGATCGGCGCGTTGACCACCGCGCTCTGGCTGGCCCGCAACCCGCTCAACCGTCGCGTTGGGCGCGTGA
TGTTCACGGCCGTGGCGATCTTTGGTCTGGCGACGATGGTGTTCGGCGTTTCCAAATGGCTGCCGTTGTCGATGGCAGCG
CTCGTGGTGCTCGGTGCTTCAGACATGATCAGCGTCGTGGTGCGCCAGACGCTGGTGCAGCTCGACACCCCCGATGACAT
GCGCGGACGCGTGGGCGCGGTGAATTCGGTGTTCATCGGCGCTTCCAACCAGCTTGGCGAGTTCGAATCCGGGGTGACCG
CCGCGCTGCTCGGGCCGGTTGGCGCGGTCCTGCTGGGTGGTGTCGGCACGCTGATCGTGGTGGTGGCGTGGATGCGCCTG
TTCCCGAACCTCACCGAGCGTGATCGCCTGCACGACCATCATCCGGCCAAGGCAAGCTGA

Upstream 100 bases:

>100_bases
TGTGTCCAAGTGCACGCATTCGTGCGCTTCCCGCCTCGCAGCACACCAAATATGCTGCCGAAACATCTCCGACGTGCTCC
TTCGAGCGCCGATACACCCA

Downstream 100 bases:

>100_bases
GCGGCATGGCCGCTCGCCGGCAGAAAAGCGTACCCGTTTCTGCGCGCCGGTGATCGCGCTATAGTCGCCCAATGTCCGCC
CCCTCCACACCCCTCCATGA

Product: putative major facilitator superfamily (MFS) transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; MFS Permease; Membrane Transporter; Transporter Facilitator Family; Transmembrane Protein; DrugProton Antiporter; Permease Of Facilitator Superfamily; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Facilitator Superfamily Transporter Permease; Permease Protein; Permease; Mfs Transporter; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Multidrug ABC Transporter; Integral Membrane Efflux Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; Siderophore Export Protein; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Resistance Efflux Protein; Facilitator Superfamily Transporter Transporter; Permeases Of Facilitator Superfamily

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MSTAPAQAADEPQTVFRDPAFRHFWFARLCTTIAYQIFTVAVGWQMYDLTRDPFMLGMVGLVQFLPSIVLLLMSGHVADR
FDRRIVVRTCQVLEALIAALMAAASFSGWVTSEHIFLFVAAIGGCRAFETPTLQALLPSVVTSRQLPRAVALSSSAGQTA
IIIGPALGGFAYVAGPGVVYSISAALFAIAAILVTTLKLRQAAQRMTAQASLKTLFAGFAYIRSHQVLLGAVSLDLFAVL
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALTTALWLARNPLNRRVGRVMFTAVAIFGLATMVFGVSKWLPLSMAA
LVVLGASDMISVVVRQTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAALLGPVGAVLLGGVGTLIVVVAWMRL
FPNLTERDRLHDHHPAKAS

Sequences:

>Translated_419_residues
MSTAPAQAADEPQTVFRDPAFRHFWFARLCTTIAYQIFTVAVGWQMYDLTRDPFMLGMVGLVQFLPSIVLLLMSGHVADR
FDRRIVVRTCQVLEALIAALMAAASFSGWVTSEHIFLFVAAIGGCRAFETPTLQALLPSVVTSRQLPRAVALSSSAGQTA
IIIGPALGGFAYVAGPGVVYSISAALFAIAAILVTTLKLRQAAQRMTAQASLKTLFAGFAYIRSHQVLLGAVSLDLFAVL
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALTTALWLARNPLNRRVGRVMFTAVAIFGLATMVFGVSKWLPLSMAA
LVVLGASDMISVVVRQTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAALLGPVGAVLLGGVGTLIVVVAWMRL
FPNLTERDRLHDHHPAKAS
>Mature_418_residues
STAPAQAADEPQTVFRDPAFRHFWFARLCTTIAYQIFTVAVGWQMYDLTRDPFMLGMVGLVQFLPSIVLLLMSGHVADRF
DRRIVVRTCQVLEALIAALMAAASFSGWVTSEHIFLFVAAIGGCRAFETPTLQALLPSVVTSRQLPRAVALSSSAGQTAI
IIGPALGGFAYVAGPGVVYSISAALFAIAAILVTTLKLRQAAQRMTAQASLKTLFAGFAYIRSHQVLLGAVSLDLFAVLL
GGATALLPIYARDILHTGPWGLGLLRSAPAIGALTTALWLARNPLNRRVGRVMFTAVAIFGLATMVFGVSKWLPLSMAAL
VVLGASDMISVVVRQTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAALLGPVGAVLLGGVGTLIVVVAWMRLF
PNLTERDRLHDHHPAKAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44568; Mature: 44437

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAPAQAADEPQTVFRDPAFRHFWFARLCTTIAYQIFTVAVGWQMYDLTRDPFMLGMVG
CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHH
LVQFLPSIVLLLMSGHVADRFDRRIVVRTCQVLEALIAALMAAASFSGWVTSEHIFLFVA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AIGGCRAFETPTLQALLPSVVTSRQLPRAVALSSSAGQTAIIIGPALGGFAYVAGPGVVY
HHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCHHHHCCCCHHH
SISAALFAIAAILVTTLKLRQAAQRMTAQASLKTLFAGFAYIRSHQVLLGAVSLDLFAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALTTALWLARNPLNRRVGRVMFTAVAI
HCCHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FGLATMVFGVSKWLPLSMAALVVLGASDMISVVVRQTLVQLDTPDDMRGRVGAVNSVFIG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
ASNQLGEFESGVTAALLGPVGAVLLGGVGTLIVVVAWMRLFPNLTERDRLHDHHPAKAS
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure 
STAPAQAADEPQTVFRDPAFRHFWFARLCTTIAYQIFTVAVGWQMYDLTRDPFMLGMVG
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHH
LVQFLPSIVLLLMSGHVADRFDRRIVVRTCQVLEALIAALMAAASFSGWVTSEHIFLFVA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AIGGCRAFETPTLQALLPSVVTSRQLPRAVALSSSAGQTAIIIGPALGGFAYVAGPGVVY
HHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCHHHHCCCCHHH
SISAALFAIAAILVTTLKLRQAAQRMTAQASLKTLFAGFAYIRSHQVLLGAVSLDLFAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGATALLPIYARDILHTGPWGLGLLRSAPAIGALTTALWLARNPLNRRVGRVMFTAVAI
HCCHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FGLATMVFGVSKWLPLSMAALVVLGASDMISVVVRQTLVQLDTPDDMRGRVGAVNSVFIG
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
ASNQLGEFESGVTAALLGPVGAVLLGGVGTLIVVVAWMRLFPNLTERDRLHDHHPAKAS
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA