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The map label for this gene is ykgD [C]

Identifier: 94314723

GI number: 94314723

Start: 2563436

End: 2564353

Strand: Reverse

Name: ykgD [C]

Synonym: Rmet_5804

Alternate gene names: 94314723

Gene position: 2564353-2563436 (Counterclockwise)

Preceding gene: 94314724

Following gene: 94314722

Centisome position: 99.39

GC content: 67.54

Gene sequence:

>918_bases
ATGTCCGCCCCCTCCACACCCCTCCATGACAACGCGGTGTTCTCCGCGCTCACGCAATCGCGTGCGTCGCTGGAGCGTGC
CTGCGCGCTGGGTGACGGGTTTGGCCTCGCGCTCTGGCGCAACCGGATGGACGACACCGCGTATGCGCGGCCCGGCCATC
ACACGATGTCGGTCTACCTCGAAGGCGGCTTCTCGACGTACCGGCGCGACGCACCCGACCGCAAGGGCGCGCCCGACCGC
CTGTGCCTGCTGCCTGCCGACCATGAGTCTCGCTGGCACGTCGGCGGCACGCAGCGCTTCATGCATCTCTACTTCCAGCC
CGAGCATCTGGCCTGGCACTGCGTGCGTGTGCTGGACATGGAGCCACGCGCGCTGCAGTTGCAGGACCGTCTGTTTGCCG
AGGACGATGCGCTGGTCGCGCTGACCCGCCAGATGGTTGCGCTCGACTGGGAAGCGCCCGACATGCGCATGGCCGCCAAT
GCGATGGCGCACGAGGCAGTGACGCGGATGCTGCTGTCACACGGTACGCGCCAGCCTTCGGTCGACTGGCGCGGCGGTCT
TTCCGCCGCCGCGCGTCGGCGTGTGACGGAGTGGGTTCACGCCCATCCGGCCGCTAATCCCACGCTCGGAGACCTGGCCG
CGCTGGCGGATCTGTCTGAGTACCACTTCGCGCGCATGTTCCGCATTTCATTCGGAATGCCCCCGCATGTCTGGATCATG
CGCGCGCGGCTGTCACGGGCGTGCGGGCTGCTGGGCGACCGGCGGCTCTCGTTGCAACAGGTAGCCGACCAGGCTGGCTT
TGCCTCCGCCAGCCATTTCAACAACAGGTTCCGCGCCGCCTATGGGGTGACGCCGGGACAAGCGCGTGCGTCTGGAATGG
GCGCACTACCGTCTATTTCGGCCTCTCAGGGATCGTAA

Upstream 100 bases:

>100_bases
ACGACCATCATCCGGCCAAGGCAAGCTGAGCGGCATGGCCGCTCGCCGGCAGAAAAGCGTACCCGTTTCTGCGCGCCGGT
GATCGCGCTATAGTCGCCCA

Downstream 100 bases:

>100_bases
GGCGCACATTTAGGCCGCTTCGCTGCACTGCGTCACGCAGAAATGGGTACGCTTTTGCTGAAGACCGATCCGGAACGTCT
CGGTCCGACGGGTGTCTACG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC-Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Regulator AraC; Transcriptional Regulatory Protein; Transcription Regulator AraC Family; AraC/XylS Family Transcription Factor; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Protein; AraC Family Regulatory Helix-Turn-Helix; Transcriptional Regulator AraC-Type; HTH-Type Transcriptional Regulator; Regulator; AraC Family Regulator; AraC Family Regulatory Protein; HTH-Type Transcriptional Regulator ChbR; Transcription Regulator Protein; Transcriptional Regulator AraC-Family; L-Rhamnose Operon Transcriptional Activator RhaR; Helix-Turn-Helix AraC Type; AraC-Type Trancriptional Regulator; Transcription Regulator; AraC Family Transcription Regulator Protein; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSAPSTPLHDNAVFSALTQSRASLERACALGDGFGLALWRNRMDDTAYARPGHHTMSVYLEGGFSTYRRDAPDRKGAPDR
LCLLPADHESRWHVGGTQRFMHLYFQPEHLAWHCVRVLDMEPRALQLQDRLFAEDDALVALTRQMVALDWEAPDMRMAAN
AMAHEAVTRMLLSHGTRQPSVDWRGGLSAAARRRVTEWVHAHPAANPTLGDLAALADLSEYHFARMFRISFGMPPHVWIM
RARLSRACGLLGDRRLSLQQVADQAGFASASHFNNRFRAAYGVTPGQARASGMGALPSISASQGS

Sequences:

>Translated_305_residues
MSAPSTPLHDNAVFSALTQSRASLERACALGDGFGLALWRNRMDDTAYARPGHHTMSVYLEGGFSTYRRDAPDRKGAPDR
LCLLPADHESRWHVGGTQRFMHLYFQPEHLAWHCVRVLDMEPRALQLQDRLFAEDDALVALTRQMVALDWEAPDMRMAAN
AMAHEAVTRMLLSHGTRQPSVDWRGGLSAAARRRVTEWVHAHPAANPTLGDLAALADLSEYHFARMFRISFGMPPHVWIM
RARLSRACGLLGDRRLSLQQVADQAGFASASHFNNRFRAAYGVTPGQARASGMGALPSISASQGS
>Mature_304_residues
SAPSTPLHDNAVFSALTQSRASLERACALGDGFGLALWRNRMDDTAYARPGHHTMSVYLEGGFSTYRRDAPDRKGAPDRL
CLLPADHESRWHVGGTQRFMHLYFQPEHLAWHCVRVLDMEPRALQLQDRLFAEDDALVALTRQMVALDWEAPDMRMAANA
MAHEAVTRMLLSHGTRQPSVDWRGGLSAAARRRVTEWVHAHPAANPTLGDLAALADLSEYHFARMFRISFGMPPHVWIMR
ARLSRACGLLGDRRLSLQQVADQAGFASASHFNNRFRAAYGVTPGQARASGMGALPSISASQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33756; Mature: 33624

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPSTPLHDNAVFSALTQSRASLERACALGDGFGLALWRNRMDDTAYARPGHHTMSVYL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
EGGFSTYRRDAPDRKGAPDRLCLLPADHESRWHVGGTQRFMHLYFQPEHLAWHCVRVLDM
ECCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHEEEEEEECCHHHHHHHHHHHCC
EPRALQLQDRLFAEDDALVALTRQMVALDWEAPDMRMAANAMAHEAVTRMLLSHGTRQPS
CCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
VDWRGGLSAAARRRVTEWVHAHPAANPTLGDLAALADLSEYHFARMFRISFGMPPHVWIM
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RARLSRACGLLGDRRLSLQQVADQAGFASASHFNNRFRAAYGVTPGQARASGMGALPSIS
HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCHHEEEECCCCCCHHHCCCCCCCCCC
ASQGS
CCCCC
>Mature Secondary Structure 
SAPSTPLHDNAVFSALTQSRASLERACALGDGFGLALWRNRMDDTAYARPGHHTMSVYL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
EGGFSTYRRDAPDRKGAPDRLCLLPADHESRWHVGGTQRFMHLYFQPEHLAWHCVRVLDM
ECCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCHHEEEEEEECCHHHHHHHHHHHCC
EPRALQLQDRLFAEDDALVALTRQMVALDWEAPDMRMAANAMAHEAVTRMLLSHGTRQPS
CCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
VDWRGGLSAAARRRVTEWVHAHPAANPTLGDLAALADLSEYHFARMFRISFGMPPHVWIM
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RARLSRACGLLGDRRLSLQQVADQAGFASASHFNNRFRAAYGVTPGQARASGMGALPSIS
HHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHCCHHEEEECCCCCCHHHCCCCCCCCCC
ASQGS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA