Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 94314132

GI number: 94314132

Start: 1906845

End: 1907510

Strand: Reverse

Name: ydhC [H]

Synonym: Rmet_5213

Alternate gene names: 94314132

Gene position: 1907510-1906845 (Counterclockwise)

Preceding gene: 94314134

Following gene: 94314117

Centisome position: 73.93

GC content: 66.22

Gene sequence:

>666_bases
GTGACCACCATCGCTTCCCAAATTGGCCAGCAACTTGCCGACGAGATCATCTCGGGCGCGCTGCCGCCCGGCGCGAAGCT
CGAGGAGCCTGCGCTGGCCGAGCGTTTCCAGGTATCGCGCACGCCAGTGCGCGAGGCGCTGCGGCTGCTCGATGCACGCG
GCCTGATAGAACTGGTGCCGCGTCGCGGCGGGGTGGTGATCAACACCAGCCCCGAGCAACTCGCCGATATGCTCGAGGCA
CTGTGCGAACTGGAGTCGCTGTGCTGCCGCATTGCCACGCAGCGTATGAGCGCGATGCAGCGCCGGCAGCTGGAACTCCT
GCACGAAGAGGCCATCTCCGCTGCGGAGAAACACGACAGTGACGCTTACCTGACCCTGAACCATCGCTTTCATCAACTGA
TCTGCCAAGGCACCCAGAATGCGACCCTGGTAGCTGCGGTGGAAAGCCTGCGCGAGCGGCTGGCGCCGTTCCGCGCGGCG
CAGTCGGGCGTCGAGCGCCGCTTCGAGGTTTCGCACCGCGAGCACCAGCAGATCGTGGAGGCAGTGCTGGGCGGCCATCC
CGAGCAGGCCTATCTGGCGATGCGCAGCCACACCACGCGGCTCACCCTGCATGTGATGGAACTGATCCAGTCGAAGCAGG
GCGGCGGCGCGAAAAGCGCGGGCTGA

Upstream 100 bases:

>100_bases
TCAATAGAAGAAAAAAGTACTCACATGGGTAAATAAAAATAACCAGTCTTCATCGCGTATAATTGCGTCGCATCCAGCGC
GTACCAGACCTGAGGACACC

Downstream 100 bases:

>100_bases
TACCGGGCGAGGCGGCATCCAAGTCCGCCGCTGTCCGATACAGCGGCGGAGCACCGATGTGCAGCGGGGTCCTCAGCCTG
TCAGACCGAAGAAGCGCATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTTIASQIGQQLADEIISGALPPGAKLEEPALAERFQVSRTPVREALRLLDARGLIELVPRRGGVVINTSPEQLADMLEA
LCELESLCCRIATQRMSAMQRRQLELLHEEAISAAEKHDSDAYLTLNHRFHQLICQGTQNATLVAAVESLRERLAPFRAA
QSGVERRFEVSHREHQQIVEAVLGGHPEQAYLAMRSHTTRLTLHVMELIQSKQGGGAKSAG

Sequences:

>Translated_221_residues
MTTIASQIGQQLADEIISGALPPGAKLEEPALAERFQVSRTPVREALRLLDARGLIELVPRRGGVVINTSPEQLADMLEA
LCELESLCCRIATQRMSAMQRRQLELLHEEAISAAEKHDSDAYLTLNHRFHQLICQGTQNATLVAAVESLRERLAPFRAA
QSGVERRFEVSHREHQQIVEAVLGGHPEQAYLAMRSHTTRLTLHVMELIQSKQGGGAKSAG
>Mature_220_residues
TTIASQIGQQLADEIISGALPPGAKLEEPALAERFQVSRTPVREALRLLDARGLIELVPRRGGVVINTSPEQLADMLEAL
CELESLCCRIATQRMSAMQRRQLELLHEEAISAAEKHDSDAYLTLNHRFHQLICQGTQNATLVAAVESLRERLAPFRAAQ
SGVERRFEVSHREHQQIVEAVLGGHPEQAYLAMRSHTTRLTLHVMELIQSKQGGGAKSAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=149, Percent_Identity=32.8859060402685, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789353, Length=232, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24369; Mature: 24238

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIASQIGQQLADEIISGALPPGAKLEEPALAERFQVSRTPVREALRLLDARGLIELVP
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
RRGGVVINTSPEQLADMLEALCELESLCCRIATQRMSAMQRRQLELLHEEAISAAEKHDS
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DAYLTLNHRFHQLICQGTQNATLVAAVESLRERLAPFRAAQSGVERRFEVSHREHQQIVE
CCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLGGHPEQAYLAMRSHTTRLTLHVMELIQSKQGGGAKSAG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TTIASQIGQQLADEIISGALPPGAKLEEPALAERFQVSRTPVREALRLLDARGLIELVP
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
RRGGVVINTSPEQLADMLEALCELESLCCRIATQRMSAMQRRQLELLHEEAISAAEKHDS
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DAYLTLNHRFHQLICQGTQNATLVAAVESLRERLAPFRAAQSGVERRFEVSHREHQQIVE
CCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLGGHPEQAYLAMRSHTTRLTLHVMELIQSKQGGGAKSAG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]