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The map label for this gene is yjcD [H]

Identifier: 94313856

GI number: 94313856

Start: 1599120

End: 1600502

Strand: Direct

Name: yjcD [H]

Synonym: Rmet_4934

Alternate gene names: 94313856

Gene position: 1599120-1600502 (Clockwise)

Preceding gene: 94313854

Following gene: 94313857

Centisome position: 61.98

GC content: 66.96

Gene sequence:

>1383_bases
ATGATCGAACAGCCCTATCCGTCCGTCGCGGACACGGATGCCGCGCCCCCCACTGCCCAAGGCAAAATCGACCAGTACTT
CCAGATCAGCGCGCGCGGCAGCACGCAGCGCCGCGAGGTCGTCGCCGGCATCACCACCTTCATGGCGATGGTGTATGCCG
TTTTCGTCGTGCCTGGGATGCTCGGCAAGGCCGGCTTCGATACCAGCGCGGTATTTGTCGCCGTCTGCCTTACCACCGCC
TTCGGCTCGCTACTGATGGGCCTCTGGGCCAAGCTGCCGATTGCCATTGGTTGCGCGATCTCGCTGACCGCATTCATGGC
CTTTGGCCTGGTGCTGGGCCAGCACCTGTCCCCCGCCGTGGCGCTGGGCGCCGTGTTCCTGATGGGCGTGGTCTTCACCG
CGATCTCGGTGACCGGCGTGCGCACCTGGATCCTGCGCAACCTGCCCGCAGGCGTGGCACACGGCGCCGGCATCGGTATC
GGCCTGTTCCTGCTGCTGATCGCTTCAAACGAAGTCGGCCTCGTCATCAAGAACCCCGGACCCGGACTGCCCGTCTCGCT
CGGCAATATCACCGCCTTCCCGGTGATGATGTCGATCCTCGGACTGGCCGCGATCTTCGGCCTTGAGCGTCGCCGCGTGC
CGGGTGGCATCCTGCTGGTGATCGTGGCGATCTCGGCGCTCGGCCTTGTTTTCGATCCATCGGTCAAGTTCACCGGCATC
TTCGCGCTGCCGACGCTCTCCGCGCCGGGTCACACCTCGCTGATTGGCGCCATGGATATTCGCGGCGCGCTGTCCGCCGC
GGTGCTGCCGAGTGTGCTGGCACTGGTGATGACCGCCGTCTTCGACGCCACCGGCACGATCCGCGCGGTGGCCGGTCAGG
CCAACCAGCTCGACGCCACGGGCCGCATCCACAACGGTGGCCGCGCCCTGACCGCCGACTCCGTGAGCTCGATCTTCTCG
GCCTTCTTCGGCGGCGCCCCGGCTGCGGCCTATATCGAATCGACCGTCGGCGTGGCCGCGGGCGCCCGCACCGGCCTGGC
TGCCGTGACCGTCGGCGCGCTGTTCCTGGCCGTGATGTTCTTCTCGCCGCTGGCTGGGCTGGTGCCGTCGTACGCCACCG
CTCCCGCGCTGATGTACGTGGGTCTGCTGATGCTGTCGAGCGTGTCGCGCCTGCACATGGATGACCTGGTCGACGCGCTC
TCGGGCCTGGTCTGCGCCGTGTTCATCGTGCTGACCTGCAACATCGTCACCGGCATCATGCTCGGCTTCTGCACGCTGGT
GATCGGCCGCATCGTCTCGGGCGAATGGCGCAAGCTCAATATCGGCACGGTCGCGATTGCCGTCGCGCTGGCCGCGTTCT
ATGCAGGTGGCTGGGCGATCTGA

Upstream 100 bases:

>100_bases
ACGGGACCTCCGCCCTCACACCCGGAACCATGTGAGACGAGGCTGACGCCCGATCCGTACGCGGACGCGCGCAGCGCCCC
CTGCAAGGAGACACAACATC

Downstream 100 bases:

>100_bases
TCGCACCCATCACCGAGAATCTTGTCTCCTCCACCTGGGATGACCGGTGGATTTGCCAGCCTCCGGGGACTTTCCCCCCG
GAGGCTTTTTTCTTCCTCTC

Product: putative Xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MIEQPYPSVADTDAAPPTAQGKIDQYFQISARGSTQRREVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQHLSPAVALGAVFLMGVVFTAISVTGVRTWILRNLPAGVAHGAGIGI
GLFLLLIASNEVGLVIKNPGPGLPVSLGNITAFPVMMSILGLAAIFGLERRRVPGGILLVIVAISALGLVFDPSVKFTGI
FALPTLSAPGHTSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQANQLDATGRIHNGGRALTADSVSSIFS
AFFGGAPAAAYIESTVGVAAGARTGLAAVTVGALFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDAL
SGLVCAVFIVLTCNIVTGIMLGFCTLVIGRIVSGEWRKLNIGTVAIAVALAAFYAGGWAI

Sequences:

>Translated_460_residues
MIEQPYPSVADTDAAPPTAQGKIDQYFQISARGSTQRREVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQHLSPAVALGAVFLMGVVFTAISVTGVRTWILRNLPAGVAHGAGIGI
GLFLLLIASNEVGLVIKNPGPGLPVSLGNITAFPVMMSILGLAAIFGLERRRVPGGILLVIVAISALGLVFDPSVKFTGI
FALPTLSAPGHTSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQANQLDATGRIHNGGRALTADSVSSIFS
AFFGGAPAAAYIESTVGVAAGARTGLAAVTVGALFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDAL
SGLVCAVFIVLTCNIVTGIMLGFCTLVIGRIVSGEWRKLNIGTVAIAVALAAFYAGGWAI
>Mature_460_residues
MIEQPYPSVADTDAAPPTAQGKIDQYFQISARGSTQRREVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQHLSPAVALGAVFLMGVVFTAISVTGVRTWILRNLPAGVAHGAGIGI
GLFLLLIASNEVGLVIKNPGPGLPVSLGNITAFPVMMSILGLAAIFGLERRRVPGGILLVIVAISALGLVFDPSVKFTGI
FALPTLSAPGHTSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQANQLDATGRIHNGGRALTADSVSSIFS
AFFGGAPAAAYIESTVGVAAGARTGLAAVTVGALFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDAL
SGLVCAVFIVLTCNIVTGIMLGFCTLVIGRIVSGEWRKLNIGTVAIAVALAAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=446, Percent_Identity=71.52466367713, Blast_Score=623, Evalue=1e-180,
Organism=Escherichia coli, GI48994909, Length=444, Percent_Identity=73.1981981981982, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI87082309, Length=441, Percent_Identity=38.0952380952381, Blast_Score=290, Evalue=2e-79,
Organism=Escherichia coli, GI1790150, Length=432, Percent_Identity=38.4259259259259, Blast_Score=271, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46918; Mature: 46918

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQPYPSVADTDAAPPTAQGKIDQYFQISARGSTQRREVVAGITTFMAMVYAVFVVPGM
CCCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKAGFDTSAVFVAVCLTTAFGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQHLSPAV
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ALGAVFLMGVVFTAISVTGVRTWILRNLPAGVAHGAGIGIGLFLLLIASNEVGLVIKNPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCC
PGLPVSLGNITAFPVMMSILGLAAIFGLERRRVPGGILLVIVAISALGLVFDPSVKFTGI
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEE
FALPTLSAPGHTSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQANQLDAT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
GRIHNGGRALTADSVSSIFSAFFGGAPAAAYIESTVGVAAGARTGLAAVTVGALFLAVMF
CCEECCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDALSGLVCAVFIVLTCNIVTGIM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFCTLVIGRIVSGEWRKLNIGTVAIAVALAAFYAGGWAI
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIEQPYPSVADTDAAPPTAQGKIDQYFQISARGSTQRREVVAGITTFMAMVYAVFVVPGM
CCCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKAGFDTSAVFVAVCLTTAFGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQHLSPAV
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ALGAVFLMGVVFTAISVTGVRTWILRNLPAGVAHGAGIGIGLFLLLIASNEVGLVIKNPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCC
PGLPVSLGNITAFPVMMSILGLAAIFGLERRRVPGGILLVIVAISALGLVFDPSVKFTGI
CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEE
FALPTLSAPGHTSLIGAMDIRGALSAAVLPSVLALVMTAVFDATGTIRAVAGQANQLDAT
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
GRIHNGGRALTADSVSSIFSAFFGGAPAAAYIESTVGVAAGARTGLAAVTVGALFLAVMF
CCEECCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FSPLAGLVPSYATAPALMYVGLLMLSSVSRLHMDDLVDALSGLVCAVFIVLTCNIVTGIM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFCTLVIGRIVSGEWRKLNIGTVAIAVALAAFYAGGWAI
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]