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The map label for this gene is rutC [H]

Identifier: 94313365

GI number: 94313365

Start: 1036537

End: 1036959

Strand: Reverse

Name: rutC [H]

Synonym: Rmet_4440

Alternate gene names: 94313365

Gene position: 1036959-1036537 (Counterclockwise)

Preceding gene: 94313366

Following gene: 94313364

Centisome position: 40.19

GC content: 64.54

Gene sequence:

>423_bases
ATGCCGGGCCAACATCGCTTCCCCTCACACCGATACCCGCAACACACCATGAAACAGATCATCGATACCGGCCTGCCTCG
ATCCGCTGCTCCCGTCGAATGGGCGGTACTGGGCAACGGCATCCTGTTCACCACGCAGATCCCGACCGGCGCCGACGGCA
ACGTGGTGGAAGGCGGCATGGAAGCGCAGGCGCGCCAGACGCTGCAGAACCTGAAGCAGACGCTGGATGCGGCCGGTGGT
AGCCTTGCCGACCTGACCCAGGTCATCGTCTACGTGACCGACCGTGCCGATCTCGCCGTCTTCAACCGGGTCTATGCGGA
GATGATTCCGGCACCCTATCCCAACCGCGCGGCCATCGTGACCGTGGGTTTCGGGCGGCCCGAGATGCTAGTCGAGATCC
TCGCCTACGCGGCACTCGGCTGA

Upstream 100 bases:

>100_bases
CTGCGGCAGCGCCGCGCTGCTCGCCGACGCCATGGCCGGCCGCCCCTCGTCGCTGGATGCATCGGCGTTCGCGCTGATGC
GCTAATGCGCTGACGCGCTG

Downstream 100 bases:

>100_bases
GTCGCCCCCGCGCCAACGCTTATCTCCGAAGGACTGATCCCATGCCATCCTGCGACCTGTTGTTCACCAACGCCACGTTG
ATCGATGGTACCGGCGCCAC

Product: Endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPGQHRFPSHRYPQHTMKQIIDTGLPRSAAPVEWAVLGNGILFTTQIPTGADGNVVEGGMEAQARQTLQNLKQTLDAAGG
SLADLTQVIVYVTDRADLAVFNRVYAEMIPAPYPNRAAIVTVGFGRPEMLVEILAYAALG

Sequences:

>Translated_140_residues
MPGQHRFPSHRYPQHTMKQIIDTGLPRSAAPVEWAVLGNGILFTTQIPTGADGNVVEGGMEAQARQTLQNLKQTLDAAGG
SLADLTQVIVYVTDRADLAVFNRVYAEMIPAPYPNRAAIVTVGFGRPEMLVEILAYAALG
>Mature_139_residues
PGQHRFPSHRYPQHTMKQIIDTGLPRSAAPVEWAVLGNGILFTTQIPTGADGNVVEGGMEAQARQTLQNLKQTLDAAGGS
LADLTQVIVYVTDRADLAVFNRVYAEMIPAPYPNRAAIVTVGFGRPEMLVEILAYAALG

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=30.0813008130081, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15089; Mature: 14957

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGQHRFPSHRYPQHTMKQIIDTGLPRSAAPVEWAVLGNGILFTTQIPTGADGNVVEGGM
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCH
EAQARQTLQNLKQTLDAAGGSLADLTQVIVYVTDRADLAVFNRVYAEMIPAPYPNRAAIV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEE
TVGFGRPEMLVEILAYAALG
EEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PGQHRFPSHRYPQHTMKQIIDTGLPRSAAPVEWAVLGNGILFTTQIPTGADGNVVEGGM
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCH
EAQARQTLQNLKQTLDAAGGSLADLTQVIVYVTDRADLAVFNRVYAEMIPAPYPNRAAIV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEE
TVGFGRPEMLVEILAYAALG
EEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA