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The map label for this gene is dan [H]

Identifier: 94313364

GI number: 94313364

Start: 1035062

End: 1036495

Strand: Reverse

Name: dan [H]

Synonym: Rmet_4439

Alternate gene names: 94313364

Gene position: 1036495-1035062 (Counterclockwise)

Preceding gene: 94313365

Following gene: 94313363

Centisome position: 40.17

GC content: 68.62

Gene sequence:

>1434_bases
ATGCCATCCTGCGACCTGTTGTTCACCAACGCCACGTTGATCGATGGTACCGGCGCCACACGTCGTACCGGCGCACTGGC
CGTGACGGACGGACGCATTGTCGCGCTCGGTGACTGCTCCGGCTGGCAGGCCGCGCGTACCGTCGACGCAACCGGCCATG
TGCTGGCGCCCGGCTTCATCGACGTGCACACGCACGATGACAGCGCCCTGCTCAGCACGCCTGCAATGGCGGCCAAGACC
AGCCAGGGCGTGACGAGCGTGATTGCCGGCAACTGCGGCATCAGCATCGCGCCGCTAACACCGACCCACGGCCTGCCGCA
GCCGCTGATGCTGCTGGGCGAGGTCTCGGACTACCGCTTTCCCTCCGTCGCCGACTACCGGCGCGCGCTGGAGGCCTCGC
CACCCAGCGTCAACGTCGGTCTGCTGGTGGGCCACAGCACGCTGCGCGCGGGCGCGATGACCGATACCACGCGTGCCGCC
ACCGCCGAGGAAATCGAGGCGATGGCCGCGATGCTCGACCAGGCGCTGAGCGATGGCGGCCTGGGCATGAGCACCGGCCT
CAGCTATCCGGCAAGCCGCGCGGCGCCAACCGCCGAAGTGGTGGCCCTGGCGCGCGTGACCGCGCGTCACCCGGGCGCGA
TCTACACCACCCATATGCGCAGCGAGCGCGACCAGGTCATCGAGGCCGTTGGCGAAACGCTGGAGATCGGCCGCGAAGCC
GCGCTACCTGTCGTGATCTCGCACCACAAATGCATCGGGCGCAAGAACTTCGGCAAGACCACCGTCACCCTGAGCCTGAT
CGACAAGGCGCTGGCCACCCAGGACGTATCCCTCGACGTCTACCCCTACACGGCCAGCTCCACGGTGCTGCTGCCCGAGT
TCGTCGGCGAGGCGGAACGGATCATCGTCACGAGTTCGCAGCCGTATCCCGAGCAGGCACGCCGGGACCTGTCGGCCATC
GCCGCCGACTGGAATGTATCGCTGGAGGAAGCTGCCGCCCGGCTCGGACCGGCCACCGCGATCTATTTCCAGATGGATGA
GGGCGACCTGCGCCGCGTGCTCTCTCACCCGCGCACGATGATCGGCTCGGATGGCATTCCCGGCCCTTACCCGCACCCAC
GGCTCTGGGGCAGCTTTCCGCGCGTGCTCGGCCACTACGCCCGCGAACTGGGCCTGTTGACGCTCGAAGACGCCGTGCGC
CGCATGACGTCGCTGCCAGCCTCGGTCTTTGGTCTGCCCGGGCGTGGGGTGCTGGAAGTGGGCTACGCCGCCGATCTGGT
GCTGTTCGATCCCGAACAGGTGATCGACCGCGCCGACTACACGCAGCCGTGCGAGCCGTCGGCCGGCATCGAAGCGGTCT
ATGTCAACGGCGTGCAGGTCTGGGGCCCGGATGGCGCCACCGGCGCTGCCGCCGGACAGTTCCTGCGCCACTGA

Upstream 100 bases:

>100_bases
TGGGTTTCGGGCGGCCCGAGATGCTAGTCGAGATCCTCGCCTACGCGGCACTCGGCTGAGTCGCCCCCGCGCCAACGCTT
ATCTCCGAAGGACTGATCCC

Downstream 100 bases:

>100_bases
GCCGGACGACCCGACTACCGGCCCGCCGCCCCCGACAACATCCATCCTGACAAGAATCATGAGGAGACCCAACTTGAAAC
GCAGACACTTCCTTCTGGCG

Product: N-acyl-D-amino-acid deacylase

Products: NA

Alternate protein names: N-acyl-D-amino-acid deacylase [H]

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MPSCDLLFTNATLIDGTGATRRTGALAVTDGRIVALGDCSGWQAARTVDATGHVLAPGFIDVHTHDDSALLSTPAMAAKT
SQGVTSVIAGNCGISIAPLTPTHGLPQPLMLLGEVSDYRFPSVADYRRALEASPPSVNVGLLVGHSTLRAGAMTDTTRAA
TAEEIEAMAAMLDQALSDGGLGMSTGLSYPASRAAPTAEVVALARVTARHPGAIYTTHMRSERDQVIEAVGETLEIGREA
ALPVVISHHKCIGRKNFGKTTVTLSLIDKALATQDVSLDVYPYTASSTVLLPEFVGEAERIIVTSSQPYPEQARRDLSAI
AADWNVSLEEAAARLGPATAIYFQMDEGDLRRVLSHPRTMIGSDGIPGPYPHPRLWGSFPRVLGHYARELGLLTLEDAVR
RMTSLPASVFGLPGRGVLEVGYAADLVLFDPEQVIDRADYTQPCEPSAGIEAVYVNGVQVWGPDGATGAAAGQFLRH

Sequences:

>Translated_477_residues
MPSCDLLFTNATLIDGTGATRRTGALAVTDGRIVALGDCSGWQAARTVDATGHVLAPGFIDVHTHDDSALLSTPAMAAKT
SQGVTSVIAGNCGISIAPLTPTHGLPQPLMLLGEVSDYRFPSVADYRRALEASPPSVNVGLLVGHSTLRAGAMTDTTRAA
TAEEIEAMAAMLDQALSDGGLGMSTGLSYPASRAAPTAEVVALARVTARHPGAIYTTHMRSERDQVIEAVGETLEIGREA
ALPVVISHHKCIGRKNFGKTTVTLSLIDKALATQDVSLDVYPYTASSTVLLPEFVGEAERIIVTSSQPYPEQARRDLSAI
AADWNVSLEEAAARLGPATAIYFQMDEGDLRRVLSHPRTMIGSDGIPGPYPHPRLWGSFPRVLGHYARELGLLTLEDAVR
RMTSLPASVFGLPGRGVLEVGYAADLVLFDPEQVIDRADYTQPCEPSAGIEAVYVNGVQVWGPDGATGAAAGQFLRH
>Mature_476_residues
PSCDLLFTNATLIDGTGATRRTGALAVTDGRIVALGDCSGWQAARTVDATGHVLAPGFIDVHTHDDSALLSTPAMAAKTS
QGVTSVIAGNCGISIAPLTPTHGLPQPLMLLGEVSDYRFPSVADYRRALEASPPSVNVGLLVGHSTLRAGAMTDTTRAAT
AEEIEAMAAMLDQALSDGGLGMSTGLSYPASRAAPTAEVVALARVTARHPGAIYTTHMRSERDQVIEAVGETLEIGREAA
LPVVISHHKCIGRKNFGKTTVTLSLIDKALATQDVSLDVYPYTASSTVLLPEFVGEAERIIVTSSQPYPEQARRDLSAIA
ADWNVSLEEAAARLGPATAIYFQMDEGDLRRVLSHPRTMIGSDGIPGPYPHPRLWGSFPRVLGHYARELGLLTLEDAVRR
MTSLPASVFGLPGRGVLEVGYAADLVLFDPEQVIDRADYTQPCEPSAGIEAVYVNGVQVWGPDGATGAAAGQFLRH

Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.81 [H]

Molecular weight: Translated: 50342; Mature: 50210

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSCDLLFTNATLIDGTGATRRTGALAVTDGRIVALGDCSGWQAARTVDATGHVLAPGFI
CCCCCEEEECCEEEECCCCCCCCCEEEEECCEEEEEECCCCCCHHEEECCCCCEECCCEE
DVHTHDDSALLSTPAMAAKTSQGVTSVIAGNCGISIAPLTPTHGLPQPLMLLGEVSDYRF
EEEECCCCHHHCCCCHHHHCCCCHHHHHCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCC
PSVADYRRALEASPPSVNVGLLVGHSTLRAGAMTDTTRAATAEEIEAMAAMLDQALSDGG
CCHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
LGMSTGLSYPASRAAPTAEVVALARVTARHPGAIYTTHMRSERDQVIEAVGETLEIGREA
CCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCHHC
ALPVVISHHKCIGRKNFGKTTVTLSLIDKALATQDVSLDVYPYTASSTVLLPEFVGEAER
CCCEEEECCHHCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEEECCCCCEECHHHHCCCEE
IIVTSSQPYPEQARRDLSAIAADWNVSLEEAAARLGPATAIYFQMDEGDLRRVLSHPRTM
EEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHCCHHH
IGSDGIPGPYPHPRLWGSFPRVLGHYARELGLLTLEDAVRRMTSLPASVFGLPGRGVLEV
HCCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCEEHHHHHHHHHHCCHHHHCCCCCCEEEE
GYAADLVLFDPEQVIDRADYTQPCEPSAGIEAVYVNGVQVWGPDGATGAAAGQFLRH
CCEEEEEEECHHHHHHHCCCCCCCCCCCCEEEEEECCEEEECCCCCCHHHHHHHHCC
>Mature Secondary Structure 
PSCDLLFTNATLIDGTGATRRTGALAVTDGRIVALGDCSGWQAARTVDATGHVLAPGFI
CCCCEEEECCEEEECCCCCCCCCEEEEECCEEEEEECCCCCCHHEEECCCCCEECCCEE
DVHTHDDSALLSTPAMAAKTSQGVTSVIAGNCGISIAPLTPTHGLPQPLMLLGEVSDYRF
EEEECCCCHHHCCCCHHHHCCCCHHHHHCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCC
PSVADYRRALEASPPSVNVGLLVGHSTLRAGAMTDTTRAATAEEIEAMAAMLDQALSDGG
CCHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
LGMSTGLSYPASRAAPTAEVVALARVTARHPGAIYTTHMRSERDQVIEAVGETLEIGREA
CCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCHHC
ALPVVISHHKCIGRKNFGKTTVTLSLIDKALATQDVSLDVYPYTASSTVLLPEFVGEAER
CCCEEEECCHHCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEEECCCCCEECHHHHCCCEE
IIVTSSQPYPEQARRDLSAIAADWNVSLEEAAARLGPATAIYFQMDEGDLRRVLSHPRTM
EEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHCCHHH
IGSDGIPGPYPHPRLWGSFPRVLGHYARELGLLTLEDAVRRMTSLPASVFGLPGRGVLEV
HCCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCEEHHHHHHHHHHCCHHHHCCCCCCEEEE
GYAADLVLFDPEQVIDRADYTQPCEPSAGIEAVYVNGVQVWGPDGATGAAAGQFLRH
CCEEEEEEECHHHHHHHCCCCCCCCCCCCEEEEEECCEEEECCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8541651 [H]